FMO02348.5prime Sequence
1210 bp (1016 high quality bases) assembled on 2008-05-14
> FMO02348.5prime
CAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCGCTGCCGCC
TTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAGGATAGGGG
CATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGCCGGCATGT
TCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCTACACCAAA
GGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAACCACTTTT
AATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAAGGACTTCG
ATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCGATGATGAT
CCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCCATGCGAGA
TGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATTTACAGGCA
GCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCAAGGAGGCC
GTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAATGAACTGGA
CATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGCCTCGACAG
CCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATACCTTCTAT
CAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGCATGAAGTT
CATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAAGGTCGAGC
TTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGCTCGATGCT
ATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATGATAAACAT
GCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACAAGCATCTGCC
GTTCGCGAGTGAGCGATCGCGACATTGTCGCCCAGTGTTTCGTGTTCTTC
TTTGCTGGCTTCGAGACTTCGGCGGTGCTGATGTGCTTCACCGCTCACGA
GCTAATGGAGAACCAGGATGGTGCAGCAGAGCTTATACGAGAAGTACAGC
AGGTGACCAGACTGGAGGCAGAACTGACCTATGAGCATTTGGGCATGAAG
TATCTGATAGGTCGCACAGTTTCTGCAAAGTGGCCGGCGCAATGCGTCAA
TCGATGCACAAGGAATCCTTCAATTGTGATGTGCCAAAAGTCTGAGTCAA
AGGGCGCTAG
FMO02348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9f2-RA | 1758 | CG11466-RA | 115..1269 | 3..1139 | 5200 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12404370..12404889 | 734..215 | 2600 | 100 | Minus |
| 3R | 32079331 | 3R | 12397334..12397853 | 734..215 | 2390 | 97.3 | Minus |
| 3R | 32079331 | 3R | 12404000..12404310 | 1041..733 | 1350 | 97.8 | Minus |
| 3R | 32079331 | 3R | 12396957..12397268 | 1041..732 | 1340 | 97.4 | Minus |
| 3R | 32079331 | 3R | 12405703..12405914 | 214..3 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12398675..12398877 | 209..7 | 880 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:02 has no hits.
FMO02348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:38 Download gff for
FMO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11466-RA | 172..1346 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:19 Download gff for
FMO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 113..1287 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:12 Download gff for
FMO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 113..1287 | 1..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:12 Download gff for
FMO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12403868..12404308 | 735..1154 | 93 | <- | Minus |
| 3R | 12404370..12404889 | 215..734 | 100 | <- | Minus |
| 3R | 12405703..12405914 | 1..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:19 Download gff for
FMO02348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8229590..8230030 | 735..1154 | 93 | <- | Minus |
| arm_3R | 8230092..8230611 | 215..734 | 100 | <- | Minus |
| arm_3R | 8231425..8231636 | 1..214 | 98 | | Minus |
