FMO02349.5prime Sequence
1209 bp (1035 high quality bases) assembled on 2008-05-14
> FMO02349.5prime
CAGTCGACATGCTGATACTGCTGCCGCTGCTTGGAATTTTTGGTAATGGT
TTCGTTGCTGAAGTCGAGGCAAATCTAAGTCTGGGCTTTAAGGCCATCAA
ATTGCCCAGGCATCCGAATCCGGCCAATTGCAGTGTGGGCAACACAACAT
TCGCACATGGAGTCACATTCAAATTGGATTGTAAAACCCAATGCGTTTGC
GAGAATGGCCGCCACGCCTGCTCCACGCTCTGCCCCAATGAGCAGCTCCC
GGCGCCGGAGGACACGATTTCATGCCGATCGCCGCGCCTCGTCGAAGTTC
CCGGCCACTGTTGCAAGATGTGGCTATGTGAGAATCCAACAGCTGATGTT
TACGCCACCTGCCACAACAGCACCACCAGCGGCAATTGGACGGCCTGCAG
CAGGAGCTGCGGCCTTGGCACCGCCACGCGGCACACCACCACCCACGCGG
GCTGCCATCAACTGAGCAATTTGCGGCTCTGCGAGAATCGCAGGTGCGAC
AAGGACGACCACGAGGACAATAAGTGGAGCAGGAGCCGCCCGTTGACGCA
CAAGCGGAAGCAGCATCGCGCCCACAGCCACTCCCATCAGCGTTATCATC
ACCACAAGGAGCACGAGGAGCCGGCCCACAGGATACGAAAGGGCCACGAG
TGTCGGAGCATCCAGCGCCTAGGTCCTGCCAGGATACGACTGGGCGAGTG
CGTTTCCCGAAAGCTGTATCGACCGAAGCTCTGTGGCCGTTGCCATCGCG
GGGTCAAATGCTGTGCCCCGGCGGTATCCACTACGATACAGGTTGAGTTG
CTGTGTCCTTTAAATGCTGTCGATCCAATTAACTACGTACAGCGACGTCA
AGCGAACAAAAAAAGGCAGATGAAGGAGCCCCAGGATGATGAAGATGATG
ATGATGATGATGATGGGATGATAATGTGGAGCCTGAGCCGGTGCTGCAAG
TGCACAGTTTATGGGACACGGTCGCCTTGGAGCCAATCGATCAAGAATTC
CTGCAATCACATCAGATTACAAATCGAGAAATAAATTCAATGCGTCGAAT
GGAATACTGAAATGTTGAATGCAAGCACGAAGAAATGCAACGCGGGCAGC
AGCAACATTACGTAGCAACAGCAAAGCACGACAATATTGGCTTAACGAAT
AAATGATACAATTACAAACAATATCGAGAGCCGCGAAACCCAAAACTTAA
TATGTGTGC
FMO02349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 551..1694 | 9..1154 | 5350 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17729583..17729873 | 348..638 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17738636..17738911 | 789..1065 | 1020 | 96.8 | Plus |
| 3L | 28110227 | 3L | 17730189..17730343 | 639..793 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 17723139..17723285 | 202..348 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 17715970..17716062 | 9..101 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 17721808..17721888 | 123..203 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:21 has no hits.
FMO02349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:48 Download gff for
FMO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1731 | 1..1183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:30 Download gff for
FMO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1731 | 1..1183 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:30 Download gff for
FMO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17715964..17716062 | 1..101 | 96 | -> | Plus |
| 3L | 17716164..17716185 | 102..123 | 100 | -> | Plus |
| 3L | 17721809..17721888 | 124..203 | 100 | -> | Plus |
| 3L | 17723141..17723285 | 204..348 | 100 | -> | Plus |
| 3L | 17729584..17729873 | 349..638 | 100 | -> | Plus |
| 3L | 17730189..17730341 | 639..791 | 100 | -> | Plus |
| 3L | 17738639..17738926 | 792..1082 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:48 Download gff for
FMO02349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17731739..17732026 | 792..1082 | 96 | -> | Plus |
| arm_3L | 17709064..17709162 | 1..101 | 96 | -> | Plus |
| arm_3L | 17709264..17709285 | 102..123 | 100 | -> | Plus |
| arm_3L | 17714909..17714988 | 124..203 | 100 | -> | Plus |
| arm_3L | 17716241..17716385 | 204..348 | 100 | -> | Plus |
| arm_3L | 17722684..17722973 | 349..638 | 100 | -> | Plus |
| arm_3L | 17723289..17723441 | 639..791 | 100 | -> | Plus |
