FMO02350.5prime Sequence
1222 bp (1056 high quality bases) assembled on 2008-05-14
> FMO02350.5prime
CAGTCGACATGACACATCAGGGCATCGGCTGCCTGGTCAAGTGGTTATAT
CTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGCCAGCTCGAGTGTCG
CCAGCAGCACCACAATCGGAATAACAATAATAATAACAGAAGAGCGGACT
CGTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCGATGGCCTGGACAAC
TTCGCAGATCAGGACGCCAGCTTCGTTGGCCATGGACACCAGCCGCGTCG
GGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGGAGGCAGCGGCGGCG
GCGGCGGAAACGGAGGAGGCGGTGGAAGCCGGCACAATCGCAACGAGGAG
AGCGGCATCTCGTTGTGGATCAATGAGCAGCAGCTCAAAATGCTTACAGC
GCTCTACTTCCCACAGGGCTACTCGGAGCGCCTGTACGCCATTCACAACA
GCCGGGTGACCAATGATCTGAGGGACACGACGCTGTACAACTTCCTGGTA
ATCCCATCGGAGGTCAACTACGTTAACTTCACATGGAAGTCGGGGCGCCG
CAAATACTTCTACGACTTTGACCGCCTGCAGACCATGGATGAAAGTATCT
TGAAGGCGCCAACGCTGTCCATTCGCAAGAGCGGACGCATTCCGCAGGAG
CAGAAAAATTTTAGCATATTCCTGCCCTGCACCGGCAACAGCTCCGGCAC
CGCGTCCTTCAACGTCGGCCTCAAGATCCAGACGCGCCACAACAAGCCGC
TCTCGGGCACACCCATTCGCCTCAACTTCAAAAAGGAATGCGCCCACAGA
GGTGTGTATGATATAGACGCTTCCAACCCTACTTCACTAACAACTTTGCA
AGAATGCAGCTTGAAGTGCGGCAAGAACGGGTACTGCAACGAGCACCACA
TCTGCAGTGCACGTGGGCTACACGGGCCAATACTGCGAGACGGCCTTCTG
TTTTCCGCAGTGTCTCAATGGCGGTAACTGCACGCGCCGTCCGTCTGCAC
CTGTCCGGAGGGCTACCAGGCACGCAGTGCGAAAGTGTATTTGCAGGACA
GGTGCTTGAATGGCGGCCAGTGTATACGGAGGACAAGTGCCAGTGGTCTC
AAGTTACTACGGCTGCTTGCGAGGATTATCTCAATGGTGTGATTCCCTGC
AAGACCGAGGGACGGTCATCGGAACACCTGTTGTGCGTTGCTACGGACTC
ATTCATAGAGAGTGGACGTGGC
FMO02350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RA | 1784 | CG3135-RA | 261..1443 | 9..1181 | 5340 | 97.6 | Plus |
| shf-RB | 1796 | CG3135-RB | 261..1455 | 9..1181 | 5210 | 96.6 | Plus |
| shf-RD | 1745 | CG3135-RD | 261..1053 | 9..801 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6774561..6774951 | 399..9 | 1955 | 100 | Minus |
| X | 23542271 | X | 6774183..6774444 | 657..396 | 1310 | 100 | Minus |
| X | 23542271 | X | 6773915..6774109 | 852..658 | 975 | 100 | Minus |
| X | 23542271 | X | 6773061..6773251 | 1037..851 | 740 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:42 has no hits.
FMO02350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:52 Download gff for
FMO02350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3135-RA | 261..1443 | 9..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:38 Download gff for
FMO02350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1443 | 9..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:28 Download gff for
FMO02350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1443 | 9..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:28 Download gff for
FMO02350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6773061..6773249 | 853..1037 | 97 | <- | Minus |
| X | 6773915..6774109 | 658..852 | 100 | <- | Minus |
| X | 6774183..6774440 | 400..657 | 100 | <- | Minus |
| X | 6774561..6774951 | 9..399 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:38 Download gff for
FMO02350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6667094..6667282 | 853..1037 | 97 | <- | Minus |
| arm_X | 6667948..6668142 | 658..852 | 100 | <- | Minus |
| arm_X | 6668216..6668473 | 400..657 | 100 | <- | Minus |
| arm_X | 6668594..6668984 | 9..399 | 100 | | Minus |
