FMO02351.5prime Sequence
1222 bp (1055 high quality bases) assembled on 2008-05-14
> FMO02351.5prime
CAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCCTCGCCGTC
TCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACTGTGTCTGG
TGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCCCAAGTTCG
CCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCTCCGGACAG
GTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTCGAGGGCAC
CTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGGCGACATTC
TGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCAACGGTTCC
GGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGATTTCCTGGA
CATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCCCGAGGAGA
TGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGATTGCCCGT
GGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCACAACGAAAT
CGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCCGGGCAAGT
CCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCGCCGCTATG
GGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTCGAGGAGAA
CGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAACGATCCGA
CCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCGCCGAGTTC
TTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACCGACATGTC
CTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGAGGAGGTGC
CCGGTCGTCGTGGTTTCCCCGGTTACATGTACACGATTTGGCCACCATCT
ACGAGCGTGCCGGTCGTGTGGAGGGACGCAACGGATCCATCACCCAGATC
CCCATCTGACCATGCCCTAACGATGATATACCCATCCCATTCCCGATTTG
ACCGGTAGGACCGAGGCCAGATCTACGTCGATTCGTCAGCTGCCCAACGA
CAGATCTTACCCACCAGTCACGTGCTGCCATCGCTGTTTCCGTGATGATC
TGCCACTCGGCAGCCAGTAACGGTTAAGGAACACCTCGTGACAGTGTGCC
ACACCACGGGTATAGCCTCGGG
FMO02351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha55-RC | 2048 | CG17369-RC | 116..1250 | 9..1137 | 5365 | 98.7 | Plus |
| Vha55-RA | 2658 | CG17369-RA | 181..1315 | 9..1137 | 5365 | 98.7 | Plus |
| Vha55-RB | 2722 | CG17369-RB | 245..1379 | 9..1137 | 5365 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12625166..12626227 | 1137..82 | 4750 | 98.6 | Minus |
| 3R | 32079331 | 3R | 12627449..12627521 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:50 has no hits.
FMO02351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:53 Download gff for
FMO02351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17369-RA | 181..1320 | 9..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:41 Download gff for
FMO02351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha55-RB | 245..1384 | 9..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:10 Download gff for
FMO02351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha55-RB | 245..1384 | 9..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:10 Download gff for
FMO02351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12625161..12626227 | 82..1143 | 98 | <- | Minus |
| 3R | 12627449..12627521 | 9..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:41 Download gff for
FMO02351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8450883..8451949 | 82..1143 | 98 | <- | Minus |
| arm_3R | 8453171..8453243 | 9..81 | 100 | | Minus |
