FMO02352.5prime Sequence
905 bp (905 high quality bases) assembled on 2008-05-14
> FMO02352.5prime
CAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCATTTATTTTT
AACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGACGATCTCAG
TGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACTAGCGAAGG
CGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGGGGGCGGCG
GCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATAATTGTTAC
CGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTTCCCACCAG
TAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGGAGCAGCCG
GCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTGGCCAAGGT
GGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGTGAGGCCCG
TGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAGAGGACCAA
CAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGATGTGCCGGT
ACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGGAGAGTCCG
GCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCGATGCCAAT
TTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGTGGAGGTGG
CGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGCAGCAGGAG
AAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTGAGGCACCC
AAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTGGACTCAAA
TCAATTGGCACGTTTGCAAAATCTGAGAGTCGAACGCTGCAGCTTTCTAG
ACCAT
FMO02352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nwk-RF | 5420 | CG43479-RF | 3173..4054 | 9..888 | 4370 | 99.8 | Plus |
| nwk-RG | 4695 | CG43479-RG | 2500..3329 | 61..888 | 4110 | 99.8 | Plus |
| nwk-RK | 4713 | CG43479-RK | 2518..3347 | 61..888 | 4110 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9143525..9144327 | 88..888 | 3950 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9143243..9143324 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:03 has no hits.
FMO02352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:54 Download gff for
FMO02352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4641-RA | 463..1350 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:02 Download gff for
FMO02352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nwk-RF | 3173..4060 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:27 Download gff for
FMO02352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nwk-RF | 3173..4060 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:27 Download gff for
FMO02352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9143243..9143323 | 9..89 | 100 | -> | Plus |
| 3L | 9143527..9144333 | 90..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:02 Download gff for
FMO02352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9136343..9136423 | 9..89 | 100 | -> | Plus |
| arm_3L | 9136627..9137433 | 90..895 | 99 | | Plus |
