FMO02356.5prime Sequence
986 bp (986 high quality bases) assembled on 2008-05-14
> FMO02356.5prime
CAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGAAATGGTGG
CCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCCAGCGGTTA
CTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACCGCCACTGC
AGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTACTGCCGCCC
AGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCCACATTCGG
CAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTTCAAGCCCG
AGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCGTGGTCGAG
ATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCAGCAGCAGC
GGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGACGCTCTGG
AGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGCATCGCAAT
CACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGGCTGGTCAT
CCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAATGAGACGC
CTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCAAAGACAAT
AAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATCCGTGAGAA
TGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTGGAGTCACG
GATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGGTGCCGCAC
AACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAAGCCAAACA
GAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCGCTACGGAA
GTCGTCAGCAGATCTGCGAAAGCGACAGGTAACGACGAGTGCCAATCACG
TGCTGCTGCACTGATCATGCAAGCTTTCTAGACCAT
FMO02356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0469-RD | 3709 | CG32597-RD | 388..1348 | 9..967 | 4755 | 99.8 | Plus |
| l(1)G0469-RA | 1761 | CG32597-RA | 388..1348 | 9..967 | 4755 | 99.8 | Plus |
| l(1)G0469-RC | 2729 | CG32597-RC | 388..1308 | 9..928 | 4580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14210434..14211070 | 645..9 | 3185 | 100 | Minus |
| X | 23542271 | X | 14206594..14206777 | 827..644 | 920 | 100 | Minus |
| X | 23542271 | X | 14206329..14206468 | 961..823 | 650 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:35 has no hits.
FMO02356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:57 Download gff for
FMO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32597-RB | 351..1279 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:55 Download gff for
FMO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0469-RA | 380..1348 | 1..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:03 Download gff for
FMO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0469-RA | 380..1348 | 1..967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:03 Download gff for
FMO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14206322..14206466 | 825..967 | 98 | <- | Minus |
| X | 14206597..14206775 | 646..824 | 100 | <- | Minus |
| X | 14210434..14211074 | 1..645 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:55 Download gff for
FMO02356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14100355..14100499 | 825..967 | 98 | <- | Minus |
| arm_X | 14100630..14100808 | 646..824 | 100 | <- | Minus |
| arm_X | 14104467..14105107 | 1..645 | 99 | | Minus |
