FMO02357.5prime Sequence
1196 bp (1060 high quality bases) assembled on 2008-05-14
> FMO02357.5prime
CAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCATATCAATA
CTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTGACAAAGTT
CCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCACATACTTCA
AAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCCTGGCTCCC
TGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATGATGGAGCA
GAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTTGGGAGACC
CAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAGGACAATCC
AATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGATTCAAGTGT
AAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGATGTCTGCCC
ACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCGCCAGCTTG
AGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACTGCGCTACT
CTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCTGGCCCTGG
AAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACATCGTCATTC
TTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGTGACAAGCT
GACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGGAGTGGTGG
CCATCACCATGAACGACCTACACGATACCAAGATGACCAGAGGCGTCCTT
TTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTTTTCGTGAA
GCGAAAAAGCGATACGGAGGAGAAGGTCGATATACCATTGTTTTTCGGTT
TGTTGGCCTATGGAATATGTTGCTTTTATGGCCAATATTCTTTATCCTCC
ACTTCACCAAATAGAAACCTTTGAGCTGCCCAGTCAGGCAGTTTGCCCTT
CTATTTTTGACGCTAGTTGGCACTGGTGCTGTCGAGCTCTTTGGCTGTGG
GGCTGCTTTTGACCTTCCTCACTGATGCACGCTGCAATTTCGCTAAAGAT
CGCTAGCAATCTGTTCGATTCCTGGCTGGAACACGAATTCGCAGTTTCTA
CATGGACTCGAATACCACTTTGTGTGACCATGGGGATTCGATTTGT
FMO02357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8195-RA | 2280 | CG8195-RA | 463..1637 | 8..1161 | 5170 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15563741..15564347 | 899..293 | 3035 | 100 | Minus |
| 2R | 25286936 | 2R | 15564521..15564663 | 239..97 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 15563496..15563680 | 1076..899 | 500 | 90.9 | Minus |
| 2R | 25286936 | 2R | 15564722..15564812 | 98..8 | 455 | 100 | Minus |
| 2R | 25286936 | 2R | 15564410..15564464 | 294..240 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:32 has no hits.
FMO02357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:03:58 Download gff for
FMO02357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8195-RA | 448..1534 | 8..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:55 Download gff for
FMO02357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8195-RA | 463..1549 | 8..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:36 Download gff for
FMO02357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8195-RA | 463..1549 | 8..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:36 Download gff for
FMO02357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15563462..15563682 | 898..1105 | 91 | <- | Minus |
| 2R | 15563743..15564346 | 294..897 | 100 | <- | Minus |
| 2R | 15564411..15564464 | 240..293 | 100 | <- | Minus |
| 2R | 15564521..15564661 | 99..239 | 100 | <- | Minus |
| 2R | 15564722..15564812 | 8..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:55 Download gff for
FMO02357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11450967..11451187 | 898..1105 | 91 | <- | Minus |
| arm_2R | 11451248..11451851 | 294..897 | 100 | <- | Minus |
| arm_2R | 11451916..11451969 | 240..293 | 100 | <- | Minus |
| arm_2R | 11452026..11452166 | 99..239 | 100 | <- | Minus |
| arm_2R | 11452227..11452317 | 8..98 | 100 | | Minus |
