FMO02359.5prime Sequence
1238 bp (1021 high quality bases) assembled on 2008-05-14
> FMO02359.5prime
CAGTCGACATGACCTTGCCCACAAACACACACGCATCTGCAAACGACGGC
GGCAGCGGCAACAACAACCACAGCAATATCAGCAGTAACAACAGCAGCAG
CAGCGACGAAGACTCAGACATGTTTGGACCACCCCGCTGCTCCCCGCCCA
TCGGCTATCACCATCACCGTTCCCGTGTGCCCATGATCTCGCCAAAGCTG
CGGCAGCGCGAGGAGCGCAAGCGGATCCTCCAGCTCTGCGCCCACAAGAT
GGAGAGGATCAAGGACTCGGAGGCGAACCTGCGGCGCAGCGTCTGCATCA
ACAACACCTACTGCCGCCTGAATGACGAACTGCGGCGCGAGAAGCAGATG
CGCTACCTCCAGAATCTGCCCAGAACCAGCGACAGCGGCGCAAGCACCGA
ACTGGCGCGTGAGAATCTCTTCCAGCCGAACATGGACGACGCCAAGCCGG
CCGGCAATAGCACTAGCAATAATATCAACGCCAACGGCAAGCCTTCATCC
TCTTTTGGCGATGCCTTTGGCTCCTCAAACGGATCATCGTCGGGTCGCGG
CGGAATTTGCTCCCTGGAGAATCAACCGCCCGAGCGTCAGCAGTTGGGGA
CGCCCGCTGGTGCCTCCGCTCCCGAGGCGGCCAATTCGGCGCCCCTTTCC
GTTTCGGGCTCGGCATCGGAACGCGTGAATAACCGAAAACGCCACCTGTC
CAGCTGCAACTTGGTCAACGATCTGGAAATACTGGACAGGGAGCTGAGCG
CCATCAATGCACCCATGCTGCTAATCGATCCAGAGATTACCCAAGAGCCG
AACAGCTGGAGAAGGCCGCCTTGTCCGCCAGCAGGAAGAGATTGAGGAGC
AATAGCGGCAGCGAGGACGAAAGTGATCGCCTGGTGCGCGAGGCTCTGTC
CCAGTTCTACATACCGCAACAGCGCCTCATCTCGCATTGAGAGTGTCCCC
TGGATGTGGTTGGCTTGGGTATGGGAATGAATGTGAATGTGAATGTGGGA
GGATTAGTGAATCGGTGGCATCGGAGGCTGCAGGCGCTGCGTCGAAATGC
CCGGAGCAACGGAATGAAGCTGAATGACATACACCAATCTCAATCACCAT
CACCCATTTGCACCATCATCTGTGACTGGTCGAATTCCGAACAGGAACCA
ACTAATGAATTCCAAGTGTCAATCCATGAACCCTTGAGGCTGTGGAAGCG
TCTATCACCCTGCCTCGTAAGAGTCGGTCATACACTCA
FMO02359.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2865-RB | 5515 | CG2865-RB | 664..1812 | 9..1151 | 5245 | 98 | Plus |
CG2865-RA | 2079 | CG2865-RA | 723..1871 | 9..1151 | 5245 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2281746..2282520 | 1137..371 | 3175 | 96.9 | Minus |
X | 23542271 | X | 2292325..2292689 | 373..9 | 1825 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6860 | 19..107 | 207 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 19..113 | 202 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6809 | 20..104 | 199 | 74.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2382 | 29..107 | 193 | 72.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2424..2527 | 19..120 | 191 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6788 | 42..104 | 189 | 77.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6887 | 33..107 | 182 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2358 | 51..104 | 180 | 81.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1077..1139 | 42..104 | 180 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2475 | 34..113 | 172 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6821 | 19..104 | 164 | 68.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1096..1168 | 52..123 | 164 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1482..1571 | 24..109 | 162 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1587 | 12..101 | 162 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2856 | 42..107 | 158 | 72.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1040..1126 | 22..109 | 158 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2832 | 42..101 | 156 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2439 | 50..107 | 155 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2666 | 42..109 | 153 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6767 | 59..104 | 149 | 80.4 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1040 | 59..128 | 149 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2856 | 33..101 | 144 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2733..2823 | 20..107 | 141 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6920 | 22..107 | 141 | 66.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 911..1003 | 78..174 | 141 | 64.9 | Plus |
TART-A | 13424 | TART-A 13424bp | 12089..12181 | 78..174 | 141 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2581..2648 | 44..109 | 137 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2346 | 73..113 | 124 | 78 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2897..2938 | 58..99 | 120 | 76.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1093 | 71..103 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6746 | 76..104 | 118 | 89.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..199 | 34..106 | 116 | 66.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9229 | 34..106 | 116 | 66.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..615 | 58..143 | 114 | 62.1 | Plus |
BS | 5142 | BS BS 5142bp | 2018..2114 | 22..113 | 114 | 61.2 | Plus |
FMO02359.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:58 Download gff for
FMO02359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2865-RA | 52..1198 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:41 Download gff for
FMO02359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2865-RA | 717..1863 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:24 Download gff for
FMO02359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2865-RA | 717..1863 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:24 Download gff for
FMO02359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2281742..2282517 | 374..1143 | 97 | <- | Minus |
X | 2292325..2292693 | 1..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:41 Download gff for
FMO02359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2175775..2176550 | 374..1143 | 97 | <- | Minus |
arm_X | 2186358..2186726 | 1..373 | 98 | | Minus |