FMO02361.5prime Sequence
1203 bp (1051 high quality bases) assembled on 2008-05-14
> FMO02361.5prime
CAGTCGACATGGCGGAAGGTAATGGCGAACTGTTGGATGACATTAACCAG
AAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATTATCCCAAGCT
GCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTGGATGAGATCT
ACAAAACCGGCAAGTTGGCTCACGCCGAGCTGGACGAGCGCGCCCTGGAC
GCGCTCAAGGAGTTTCCCGTCGATGGTGCCTTGAATGTGTTGGGACAGTT
CCTGGAATCGAACCTGGAGCACGTGTCAAACAAGTCCGCCTACCTATGCG
GCGTGATGAAGACGTACCGACAGAAGAGTCGAGCCAGCCAACAGGGCGTG
GCCGCGCCCGCAACTGTCAAAGGTCCCGACGAGGACAAGATCAAGAAAAT
CCTCGAGCGCACCGGCTACACATTAGATGTGACGACAGGTCAGCGTAAAT
ACGGCGGACCGCCGCCGCATTGGGAGGGAAATGTGCCAGGCAACGGTTGC
GAGGTTTTCTGCGGCAAGATACCCAAGGACATGTACGAGGACGAACTGAT
TCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGACTCATGATGG
ACCCGATGACGGGCACAAATCGTGGTTATGCATTTGTCACATTCACAAAT
CGCGAAGCGGCCGTCAATGCAGTGCGACAGCTAAATGATTTTGAAATTCG
GACAGGCAAAAAGATTGGTGTTACGATATCATTTAACAATCACCGGCTAT
TTGTCGGCAATATACCTAAGAATAGAGATCGCGACGAATTAATTGAGGAA
TTTTCAAAACATGCACCTGGCCTATACGAGGTAATCATATACAGTTCGCC
AGATGATAAGAAAAAGATCGCGGCTTTTGCTTTCTTGAGTACGAGTCACA
CAAGGCGGCGTCTTTGGCCAAACGAGACTTGGCACAGGAGAATTAAGGTT
TGGGGATGTGATATAATAGTCGACTGGACGATCCACAGGAGGAGCCGGAT
GAGCAACATGTCAAGTTAAAGTCCTTTATGTGCGAAATCTTACCAGACGT
CTCGAGATAACTGAGACATTTGAGCAATACGGAAAGTTGAACGCGTAGAA
ATAAAGAACTATGCCTTATAACTTGAGATCCGATAGCCCGTCGAGCCTAT
GCCTTGACTTTATGGCCAGAAGAATTTGGGGAGCTTGTGAAAATATATGT
AAT
FMO02361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syp-RM | 3407 | CG17838-RM | 611..1802 | 9..1173 | 5090 | 96.6 | Plus |
| Syp-RJ | 2610 | CG17838-RJ | 350..1541 | 9..1173 | 5090 | 96.6 | Plus |
| Syp-RC | 2740 | CG17838-RC | 1050..2241 | 9..1173 | 5090 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20791935..20792251 | 124..440 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 20792311..20792555 | 436..680 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 20795136..20795274 | 678..816 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 20791747..20791865 | 9..127 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 20797144..20797279 | 817..949 | 530 | 97.8 | Plus |
| 3R | 32079331 | 3R | 20797343..20797446 | 946..1044 | 280 | 91.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:25 has no hits.
FMO02361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:04 Download gff for
FMO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17838-RC | 890..2011 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:37 Download gff for
FMO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syp-RC | 1041..2162 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:51 Download gff for
FMO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syp-RC | 1041..2162 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:51 Download gff for
FMO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20792314..20792555 | 439..680 | 100 | -> | Plus |
| 3R | 20795139..20795274 | 681..816 | 100 | -> | Plus |
| 3R | 20791742..20791863 | 1..125 | 96 | -> | Plus |
| 3R | 20791937..20792249 | 126..438 | 100 | -> | Plus |
| 3R | 20797144..20797277 | 817..947 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:37 Download gff for
FMO02361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16617464..16617585 | 1..125 | 96 | -> | Plus |
| arm_3R | 16617659..16617971 | 126..438 | 100 | -> | Plus |
| arm_3R | 16618036..16618277 | 439..680 | 100 | -> | Plus |
| arm_3R | 16620861..16620996 | 681..816 | 100 | -> | Plus |
| arm_3R | 16622866..16622999 | 817..947 | 97 | -> | Plus |
