FMO02366.5prime Sequence
1237 bp (1048 high quality bases) assembled on 2008-05-14
> FMO02366.5prime
CAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAAAGCCACTG
AAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATCGGCGACTT
CCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTGCAAATTTG
GCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCACCAACGCCG
TTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGACGAATGCTC
CGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCATAACCGAGT
GGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCCAAAGTATC
GTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATGTTCGCTGA
TCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCATGCAGCTGA
TCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCTATTGCCTC
TTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACCACCAGTTT
CGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAATGGTAGCCA
TTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGGCCCTGTTT
GCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATCACCATTTT
CTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTCGCCACGCT
GGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTCTGGAGAAG
ATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGGCCGGAGATCG
AAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAAGGCACCG
TCGTGGATCTATTCCGGACACCCTATATGCGGATAAAGACCATATTCATG
GCAACAATTGGCTAGTGGTTGCATGGTCTACTACGGCACGCTCAGTATGT
TCTCCGCGGCTGGGCGGCACATCTTCATCAGCAATGCATCGCCGCCGGAG
TGGCCATCAAGCACATGCTCTGGTGCGCCTCATGACAGTACCTCGGACGC
AGAGAACCTGGCTTCTTCCATGGGATGCAGGCTTGGCCTTATCTATGGCA
TGCCCTTTCAATCAGGCAGGTTGCGGGAACCTGGCCCATGGACCTTGGGC
GATCTATATCACCTTCCAATGTATCTACTCTGTACAC
FMO02366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8654-RD | 2938 | CG8654-RD | 759..1934 | 7..1169 | 5155 | 97.1 | Plus |
| CG8654-RC | 2402 | CG8654-RC | 78..1253 | 7..1169 | 5155 | 97.1 | Plus |
| CG8654-RB | 2284 | CG8654-RB | 105..1280 | 7..1169 | 5155 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19983109..19983624 | 545..1057 | 2130 | 98.1 | Plus |
| 2R | 25286936 | 2R | 19982307..19982705 | 7..405 | 1995 | 100 | Plus |
| 2R | 25286936 | 2R | 19982905..19983049 | 403..547 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:02 has no hits.
FMO02366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:09 Download gff for
FMO02366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8654-RA | 212..1338 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:51 Download gff for
FMO02366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8654-RB | 100..1226 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:30 Download gff for
FMO02366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8654-RB | 100..1226 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:30 Download gff for
FMO02366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19982302..19982703 | 1..403 | 99 | -> | Plus |
| 2R | 19982906..19983049 | 404..547 | 100 | -> | Plus |
| 2R | 19983112..19983692 | 548..1120 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:51 Download gff for
FMO02366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15869807..15870208 | 1..403 | 99 | -> | Plus |
| arm_2R | 15870411..15870554 | 404..547 | 100 | -> | Plus |
| arm_2R | 15870617..15871197 | 548..1120 | 96 | | Plus |
