FMO02367.5prime Sequence
1183 bp (996 high quality bases) assembled on 2008-05-14
> FMO02367.5prime
CAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGTCACTGGTG
GTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCGGAGATCAG
CTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCAGTGCGTTC
ACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGGAGCCAAAG
ACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGCCTGGACAA
CAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCCGCAGAGCA
TGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGAGGGATGCA
CTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGCTTCCTTTT
CGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGAATTCCCAT
GGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCTACACTTTC
AACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACCGCTGGACA
CTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCTACACAGCG
TTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCACCACCCAG
ATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATTGAGGTCGA
GAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGATCAGCGTA
ATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACACCGACTAC
GTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAACAACTTTGT
GGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGAACATGCAGC
CAAGTGCGATCAGCTGAAGATCACCGTCACGTTTGGACCTAACGAGTTGT
CAGAAAGTACTCAGCTTCAGGTGAACTGGACGATCCTCGATGTGTGCGCG
GCAGTGGCGTGATACATGCGGTGGCGATTCGCGTCCTTATGGGTGCTATA
TTCCACGGGCCGCGGATGTCTTCTACTGCCGGCCTCACCTTCCTACGACG
AGCCCTGGCGGCCTCAGGAATGCTGACTTTCGACGGCCTTCATCGAATGA
TAGCGGATGTGAAACCAGCAGACCTTTCAGGAC
FMO02367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPE-RA | 1267 | CG16705-RA | 28..1163 | 5..1116 | 4920 | 96.8 | Plus |
| CG18754-RB | 1687 | CG18754-RB | 1432..1511 | 5..84 | 385 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23686709..23687104 | 82..477 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 23687321..23687630 | 478..787 | 1550 | 100 | Plus |
| 3R | 32079331 | 3R | 23687689..23687859 | 786..953 | 705 | 98.2 | Plus |
| 3R | 32079331 | 3R | 23686282..23686361 | 5..84 | 385 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:38 has no hits.
FMO02367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:10 Download gff for
FMO02367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16705-RA | 10..1127 | 1..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:41 Download gff for
FMO02367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPE-RA | 25..1142 | 1..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:59 Download gff for
FMO02367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPE-RA | 25..1142 | 1..1097 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:59 Download gff for
FMO02367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23686712..23687104 | 85..477 | 100 | -> | Plus |
| 3R | 23686279..23686361 | 1..84 | 96 | -> | Plus |
| 3R | 23687321..23687630 | 478..787 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:41 Download gff for
FMO02367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19512001..19512083 | 1..84 | 96 | -> | Plus |
| arm_3R | 19512434..19512826 | 85..477 | 100 | -> | Plus |
| arm_3R | 19513043..19513352 | 478..787 | 100 | -> | Plus |
