FMO02368.5prime Sequence
1219 bp (1034 high quality bases) assembled on 2008-05-14
> FMO02368.5prime
CAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAAAGCCGCAG
ATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTCCAGAGCAC
CCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGACCAAATTCG
GTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATGGACGACAT
GACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTACAAAACCAA
GGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGATCAAGACGT
CCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTATGAAGTGG
TCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTGGTGGTGAA
TGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGATCATGCGCC
ACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGACGCGCCATG
GGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTACAACGAGGC
TTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGGTCTGATTG
GAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCATGCACCGC
GGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATCGAATCGCT
GGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCCAGCTGATG
TGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGACCGTGGCC
GTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCCAGCTTCGG
TCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGGACATGTCA
CAGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCAAGGAGTTGA
TTGAGCGCCACTGCGAGCGTCACTGGTGATGGGATAATCTGCTAGGCGTC
ATTCCCGGCGCTCTCCACCTCCATCATACCCAAAATGTCTGCACGATGTT
ATCATGACTTCGATGGCCTAATGCCGCTCGACCTCCCTGGTACTGCGGCT
ATCACTCGTATGACAAAGTCGCACGAGTTTGAATAAGGCATGGCAGCTTA
TTCATTCTATGAACATGAAACTGTGCAGTGCTACGCCCTAGCTGCCCAGG
AGAGAACATACGCGTGTGC
FMO02368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9140-RB | 1553 | CG9140-RB | 34..1146 | 9..1110 | 5155 | 98.3 | Plus |
| CG9140-RA | 1590 | CG9140-RA | 71..1183 | 9..1110 | 5155 | 98.3 | Plus |
| CG11423-RA | 2143 | CG11423-RA | 741..1571 | 108..937 | 970 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6061352..6062022 | 1072..411 | 2880 | 98.1 | Minus |
| 2L | 23513712 | 2L | 6062074..6062436 | 416..54 | 1785 | 99.4 | Minus |
| 2R | 25286936 | 2R | 17596007..17596797 | 108..898 | 940 | 74.6 | Plus |
| 2L | 23513712 | 2L | 6062642..6062687 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:08 has no hits.
FMO02368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:11 Download gff for
FMO02368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..1198 | 9..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:14 Download gff for
FMO02368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..1198 | 9..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:52 Download gff for
FMO02368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..1198 | 9..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:52 Download gff for
FMO02368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6061297..6062021 | 412..1125 | 96 | <- | Minus |
| 2L | 6062079..6062435 | 55..411 | 99 | <- | Minus |
| 2L | 6062642..6062687 | 9..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:14 Download gff for
FMO02368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6061297..6062021 | 412..1125 | 96 | <- | Minus |
| arm_2L | 6062079..6062435 | 55..411 | 99 | <- | Minus |
| arm_2L | 6062642..6062687 | 9..54 | 100 | | Minus |
