FMO02369.5prime Sequence
1205 bp (1034 high quality bases) assembled on 2008-05-14
> FMO02369.5prime
CAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTATGGAGGAG
TTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATCAGTTTGGG
CTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAACGCCGGGAC
TGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGAATGTGGGA
TTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGACCAGGCGGA
GGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTTCGACATCT
CGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGCGGGCGGGC
TGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGGAGCACCAA
GTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATGTGTTCGTG
CCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCATCATCCAC
AAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATGAGCTACGT
GATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATGGAGCCAGG
TGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACTGCATCACG
CCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAAAAGTGCGA
ACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCTCATGGCCT
GGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGGACAAGCTT
TTCCTGCCCAAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGGACCGAGG
ACGAGATCAATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAG
GACCGGATCGATGAGGGCGCCGCCACTGCGACCGTCTCCGCGACCTTGCC
GCCCTCGCGAGAGCTGGGCTGCAGCCCCACCAGCTGTCCATCGCCTGGTC
GCTGAAACATGAGCCAGTGCATGCCTGCCTGCTGGCGCCAATCGCCGGAG
CAGCTGCACCAAAAGTCTGCAGTCGTGCAGCTGGCTGCACGACTCTCATT
CAGAGCGTATGCTTGGAACTGGAAGGATATTTGGAAAACAGCGGTCGCCC
CCAATATCTCCACCTTGGCCCCGGCGAGACTTTTCTAGTACACATTCCTT
TGTTG
FMO02369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hk-RG | 7021 | CG43388-RG | 1156..2291 | 8..1140 | 5215 | 98.2 | Plus |
| Hk-RF | 3788 | CG43388-RF | 1411..2546 | 8..1140 | 5215 | 98.2 | Plus |
| Hk-RD | 4046 | CG43388-RD | 1669..2804 | 8..1140 | 5215 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10240680..10241019 | 868..528 | 1655 | 99.7 | Minus |
| X | 23542271 | X | 10241416..10241737 | 402..81 | 1610 | 100 | Minus |
| X | 23542271 | X | 10241114..10241241 | 528..401 | 640 | 100 | Minus |
| X | 23542271 | X | 10239684..10239897 | 1076..868 | 635 | 94 | Minus |
| X | 23542271 | X | 10242808..10242884 | 83..7 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:11 has no hits.
FMO02369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:12 Download gff for
FMO02369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32688-RB | 292..1419 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:29 Download gff for
FMO02369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RF | 1403..2530 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:41 Download gff for
FMO02369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RD | 1661..2788 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:41 Download gff for
FMO02369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10239679..10239897 | 868..1080 | 95 | <- | Minus |
| X | 10240681..10241018 | 529..867 | 99 | <- | Minus |
| X | 10241114..10241241 | 401..528 | 100 | <- | Minus |
| X | 10241418..10241736 | 82..400 | 100 | <- | Minus |
| X | 10242810..10242888 | 1..81 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:29 Download gff for
FMO02369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10133712..10133930 | 868..1080 | 95 | <- | Minus |
| arm_X | 10134714..10135051 | 529..867 | 99 | <- | Minus |
| arm_X | 10135147..10135274 | 401..528 | 100 | <- | Minus |
| arm_X | 10135451..10135769 | 82..400 | 100 | <- | Minus |
| arm_X | 10136843..10136921 | 1..81 | 93 | | Minus |
