FMO02371.5prime Sequence
1224 bp (1039 high quality bases) assembled on 2008-05-14
> FMO02371.5prime
CAGTCGACATGGATTACATTGTGAAGGCCTACAAGGATTGGAAACTGCAT
TCGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTT
CAACGAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACG
GGAGCACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCAC
ATCGTCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTG
CACGACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCC
TGTTCCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTAC
TATCCCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGC
CACGCCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACA
ATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGAC
ATCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAA
CACAAGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACC
AACAGCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGG
GAGCTGCTGGTGGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGG
CCACGGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCG
CAATGACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAAC
AAGATAGACAACACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAA
GGACCTGGTCAGCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCG
CCGACGTTTTCCCGCAGCGCCGCCATCCGCTGAACACTCCTACAGACCAA
CACAACGACCGTCCGTCGCAGTATCAGCGCCACAGCTCGACGGGCAGCGG
GAACTCTCGGAAACGGCGCACCTGCTGACACGACGCAGAACGCGACGAGT
CAGATTCGCTGAAGCGCCTGGAGAAGGCACCAGACGACTTCTTTGAGTTG
CCAGCCTTCTAGAACCATTCGTTGGCGCGCGGCCAGGTAATGCCATATCT
ATCTATCCAATCTATATCCACTAGGCCTAAGAGAATTCGGGCCTGGAACA
TGTGCTGTGCAATCTCCCCATTAC
FMO02371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-RG | 2535 | CG12207-RG | 642..1739 | 9..1100 | 5205 | 98.8 | Plus |
CG12207-RF | 2113 | CG12207-RF | 220..1317 | 9..1100 | 5205 | 98.8 | Plus |
CG12207-RC | 1997 | CG12207-RC | 104..1201 | 9..1100 | 5205 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14300419..14301018 | 254..853 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 14298786..14298987 | 53..254 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 14301228..14301480 | 854..1100 | 770 | 93.3 | Plus |
3R | 32079331 | 3R | 14290773..14290820 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 465..630 | 319 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6893 | 467..630 | 275 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6956 | 445..612 | 220 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2449 | 487..642 | 216 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1157 | 534..633 | 165 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6824 | 515..630 | 161 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..6563 | 480..630 | 149 | 58.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 849..1005 | 464..630 | 146 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2661 | 431..633 | 138 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 535..630 | 130 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 590..630 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6800 | 590..630 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2376 | 593..633 | 111 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6758 | 598..630 | 111 | 81.8 | Plus |
FMO02371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:00 Download gff for
FMO02371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RB | 415..1523 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:08 Download gff for
FMO02371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RB | 415..1523 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:47 Download gff for
FMO02371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RC | 97..1205 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:47 Download gff for
FMO02371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14301228..14301480 | 854..1100 | 94 | == | Plus |
3R | 14290766..14290820 | 1..56 | 92 | -> | Plus |
3R | 14298790..14298987 | 57..254 | 100 | -> | Plus |
3R | 14300420..14301018 | 255..853 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:08 Download gff for
FMO02371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10116488..10116542 | 1..56 | 92 | -> | Plus |
arm_3R | 10124512..10124709 | 57..254 | 100 | -> | Plus |
arm_3R | 10126142..10126740 | 255..853 | 100 | -> | Plus |
arm_3R | 10126950..10127202 | 854..1100 | 94 | == | Plus |