FMO02372.5prime Sequence
1212 bp (1013 high quality bases) assembled on 2008-05-14
> FMO02372.5prime
CAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGCTCTCGATG
ATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTGGGCTATGT
GACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCTGGGCGACA
TTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCACCGAAAAAG
TGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTGGGTGCTTT
GGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCACCATCGAGG
CTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTGAACTGCTT
GTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGACTTTGTCT
GCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGGCGGACTCA
CCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACGAGGGCGAG
GATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAGGCACCGGT
CAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGATGAATATGC
GCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCATCATTGTC
GTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTACCGGTACTA
CATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCTGCACTCCG
TGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAACGGTGCCC
ACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAGAAAGTTGA
TGGCGTGCTGGCTGTGCACGAGTTCCATGTGTGGCAACTGGCCGGCGACC
GCATCATCGCCTCTGCCCATATTAGGTGCCGTAACCTTTCGGAGTACATG
AGATTGCCGAAAAGGTGAAGGAGTTCTTCACAACGAGGGTATTCCACTCT
ACCACCATTCAGCCAGAGTTCAGCGGAGATCGAAGGCTGCAACATGTCCG
ATGGGCACCTCCAGCATCAATCACGGTTCGACTGCTGCCGTTTGATTGTC
CTACACGGAGAAGGGATGTGTCAAGGCACTGCCTGTCCAAACACACACAT
TGAACATTCCTACCACATCCCGTATCTGTGCGCCACGAAAAGTCCTCCCA
CAAGGCGCCGTG
FMO02372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT63C-RG | 1959 | CG17723-RG | 146..1269 | 9..1127 | 5280 | 98.6 | Plus |
| ZnT63C-RF | 2033 | CG17723-RF | 220..1343 | 9..1127 | 5280 | 98.6 | Plus |
| ZnT63C-RE | 1955 | CG17723-RE | 142..1265 | 9..1127 | 5280 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3311885..3312405 | 408..928 | 2605 | 100 | Plus |
| 3L | 28110227 | 3L | 3310530..3310706 | 9..185 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 3310770..3310896 | 184..310 | 620 | 99.2 | Plus |
| 3L | 28110227 | 3L | 3312512..3312658 | 923..1070 | 500 | 96.7 | Plus |
| 3L | 28110227 | 3L | 3311728..3311827 | 309..408 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:30 has no hits.
FMO02372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:02 Download gff for
FMO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17723-RE | 130..1270 | 9..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:08 Download gff for
FMO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT63C-RE | 142..1282 | 9..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:46 Download gff for
FMO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT63C-RE | 142..1282 | 9..1145 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:46 Download gff for
FMO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3310530..3310706 | 9..185 | 100 | -> | Plus |
| 3L | 3310772..3310896 | 186..310 | 99 | -> | Plus |
| 3L | 3311730..3311827 | 311..408 | 100 | -> | Plus |
| 3L | 3311886..3312402 | 409..925 | 100 | -> | Plus |
| 3L | 3312515..3312721 | 926..1127 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:08 Download gff for
FMO02372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3310530..3310706 | 9..185 | 100 | -> | Plus |
| arm_3L | 3310772..3310896 | 186..310 | 99 | -> | Plus |
| arm_3L | 3311730..3311827 | 311..408 | 100 | -> | Plus |
| arm_3L | 3311886..3312402 | 409..925 | 100 | -> | Plus |
| arm_3L | 3312515..3312721 | 926..1127 | 92 | == | Plus |
