FMO02373.5prime Sequence
1198 bp (1040 high quality bases) assembled on 2008-05-14
> FMO02373.5prime
CAGTCGACATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACTATAGCACG
GGGACCGATGCAAACACTCTGTTCGTGGATGGGGAACGGGTTCTGTGCTT
CCACGGACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAAACCCGATG
CGACGCCGGTTGAGTACTACATCCACTACGCGGGCTGGAGTAAAAACTGG
GACGAGTGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGATGACAACGT
CAAGCGACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTCCAAGAAGG
ATAATAAGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGATGCGGAAC
GAATCTCGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCGCAATCGAC
CGCTAGCAGCACACCAACAACTAGCGCCGGACCGGGAAGCAAATCGGAAG
CCGGGAGCACTGGCACCACGACTACTAACAGCACCGCCAACTCTACAACC
AGCCGGGCCCACCGAAAGTCCACACAATCGACGCCATCCACAGCAAGACC
TGGCACGCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGAGACCACTG
AGGAAGAGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCGAACAACGG
CCTTCTCTTACGGGAAGCGATGTAGCAGAAAAGCCGTTGCCGCCCACTAC
CACTCCATCCACACCCACCACGGAGCCGGCACCGTGTGTGGAAAGCGAGG
AGGCCTACGCAGCTAAGGTGGAGGTCAAGATTAAGATACCCGACGAGTTA
AAGCACTATCTGACCGACGACTGGTATGCGGTGGTGCGGGAGCACAAACT
GCTGGAGCTGCCCGCCAAGGTTACCGTGCAGCAGATCTCTGAGCAGTATT
TGGCGCACAAGAAGTCCGTGAAATCGACCAGTGCCAGCAAGAGGTTGCCA
TAAACGATGTACTCGACGGAATGTAGAGTACTTCAATGTAATGCTGGGCT
CCCAGTTGCTGTACAATCGAACGCACCCAGTACGCCGGATGTGATGCAGA
GCATCGGACCCACGTGTCCGAGCTTACGATCTTTCACCTGCTGCTCTGTT
GTCCGCCTGCTCAATGCTCAGCTACCTGGCTGGATCACAGTCCATGGCTA
CCTACTCCGCACGTGCAGAAATTTCCTTTAAGTTCTCCTGCGGTGAGA
FMO02373.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MRG15-RA | 1496 | CG6363-RA | 77..1264 | 9..1178 | 5330 | 97.6 | Plus |
| MRG15-RB | 1511 | CG6363-RB | 77..1279 | 9..1178 | 5170 | 96.4 | Plus |
| l(3)neo43-RC | 627 | CG14865-RC | 575..627 | 9..61 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15276815..15277557 | 1050..311 | 3505 | 99.3 | Minus |
| 3R | 32079331 | 3R | 15277613..15277729 | 313..197 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 15277786..15277901 | 196..81 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 15277960..15278033 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:01 has no hits.
FMO02373.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:17 Download gff for
FMO02373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6363-RA | 77..1231 | 9..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:18 Download gff for
FMO02373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRG15-RA | 77..1231 | 9..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:16 Download gff for
FMO02373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRG15-RA | 77..1231 | 9..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:16 Download gff for
FMO02373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15276705..15277555 | 313..1146 | 97 | <- | Minus |
| 3R | 15277614..15277729 | 197..312 | 100 | <- | Minus |
| 3R | 15277786..15277900 | 82..196 | 100 | <- | Minus |
| 3R | 15277961..15278033 | 9..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:18 Download gff for
FMO02373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11102427..11103277 | 313..1146 | 97 | <- | Minus |
| arm_3R | 11103336..11103451 | 197..312 | 100 | <- | Minus |
| arm_3R | 11103508..11103622 | 82..196 | 100 | <- | Minus |
| arm_3R | 11103683..11103755 | 9..81 | 100 | | Minus |
