FMO02376.5prime Sequence
1227 bp (1047 high quality bases) assembled on 2008-05-14
> FMO02376.5prime
CAGTCGACATGCTGACGCTCCTGGTACTCGTGTTCACCGTCGGACTTCTG
CTATATGTCAAGCTACGCTGGCATTACAGCTACTGGAGCAGAAGGGGCGT
CGCCGGAGAAAGACCCGTGTACTTCCGCGGCAATATGAGTGGGCTGGGAA
GGGACCTTCACTGGACGGATATCAACCTGCGGATCTACCGGAAGTTTCGG
GGAGTGGAGCGCTACTGCGGCTACTTCACTTTTATGACCAAGTCGCTGTT
TATCATGGATCTGGAACTGATCCGCGATATAATGATCAGGGACTTTTCCA
GCTTCGCCGATCGAGGACTCTTCCATAATGTGCGGGACGATCCACTGACC
GGGAACCTTCTCTTCCTGGACGGACCGGAGTGGCGCTGGTTGCGCCAGAA
TTTGACGCAGGTGTTCACCTCCGGCAAGATGAAATTCATGTTCCCCAACA
TGGTGGAGGTGGGCGAGAAGCTAACGCAGGCGTGTCGCCTCCAGGTCGGC
GAGATAGAGGCAAAGGATCTGTGTGCCAGGTTCACCACGGATGTGATCGG
CAGCTGTGCCTTCGGCCTCGAGTGTAATAGTCTCCAGGATCCGGAGTCGC
AGTTCCGGCGAATGGGCCGATCAGTGACCCAGGAGCCCCTGCATTCGGTG
CTCGTCCAGGCCTTTATGTTTGCCCAGCCGGAGTTGGCTAGGAAGCTGCG
CTTCAGGCTTTTTCGCCCGGAGGTCAGTGAGTTCTTCTTGGACACGGTAC
GCCAGACATTGGACTACAGGCGACGGGAGAATATTCATCGCAACGACCTG
ATCCAACTACTAATGGAATTGGGTGAGGAGGGAGTAAAAGACGCCCTCTC
CTTCGAGCAGATTGCGGCCCAGGCATTGGTTTTCTTTTTGGCCGGGTTCG
ACACCTCCTCCACCACCATGTCCTTCTGCCTGTATGAGCTGGCCTCAACC
CCGGATGTCCAAGAAAGGCTACGGGTTGAGGTCTTCGCCGTTTTGAAACG
CAACAACCAAAAGCTCAGGTACGACTCCGGTTCAGGAGATGCCCTACCTG
GACAGGGGTGCCGAGACGCTCCCAAGTATCCTATACTGCCTCACTTACTG
GAGGCGTTCACAGGGATACAGGATCGAATAGCACTATTCTGGAAACGATC
AGATAAATACCTGGGTCAATAAATCTCACTCACCGCACACGTAGGCCTAT
ATCCGATACTCAGAAGAGATGTGACTT
FMO02376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a13-RA | 1649 | CG2397-RA | 32..1135 | 8..1109 | 5270 | 98.8 | Plus |
| Cyp6a14-RE | 2959 | CG8687-RE | 2164..2254 | 855..945 | 275 | 86.8 | Plus |
| Cyp6a14-RC | 1626 | CR8687-RC | 940..1030 | 855..945 | 275 | 86.8 | Plus |
| Cyp6a14-RE | 2959 | CG8687-RE | 1789..1868 | 513..592 | 190 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8570530..8571625 | 8..1100 | 5125 | 98.5 | Plus |
| 2R | 25286936 | 2R | 8564949..8565039 | 945..855 | 275 | 86.8 | Minus |
| 2R | 25286936 | 2R | 6780843..6780895 | 577..525 | 190 | 90.6 | Minus |
| 2R | 25286936 | 2R | 8565335..8565414 | 592..513 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:23 has no hits.
FMO02376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:21 Download gff for
FMO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2397-RA | 19..1145 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:56 Download gff for
FMO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a13-RA | 22..1148 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:37 Download gff for
FMO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a13-RA | 22..1148 | 1..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:37 Download gff for
FMO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8570520..8571646 | 1..1119 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:56 Download gff for
FMO02376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4458025..4459151 | 1..1119 | 98 | | Plus |
