FMO02377.5prime Sequence
641 bp (641 high quality bases) assembled on 2008-05-14
> FMO02377.5prime
CAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGGCCGTGGTG
GCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCTGAGATTAC
CAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCATGCGCAATC
AGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCATGGGCGCC
TACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAGCACTTCTT
CAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGTGGAGTACC
TGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGATCAATGTG
CCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCCCTGTCCGA
CGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAAGCTGATCC
AGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGGACTACCTG
ACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAGCTCGCCGG
CAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGAACTGGGCG
AGTTCCTGTTCGACAAGACCCTGGCAAGCTTTCTAGACCAT
FMO02377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RD | 1187 | CG2216-RD | 159..773 | 9..623 | 3075 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..813 | 9..623 | 3075 | 100 | Plus |
| Fer1HCH-RB | 1135 | CG2216-RB | 107..721 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386596 | 353..76 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 30385987..30386257 | 623..353 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:05 has no hits.
FMO02377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:22 Download gff for
FMO02377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2216-RD | 423..1041 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:46 Download gff for
FMO02377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..725 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:41 Download gff for
FMO02377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..725 | 9..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:41 Download gff for
FMO02377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30385983..30386256 | 354..628 | 99 | <- | Minus |
| 3R | 30386319..30386596 | 76..353 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 9..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:46 Download gff for
FMO02377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26211705..26211978 | 354..628 | 99 | <- | Minus |
| arm_3R | 26212041..26212318 | 76..353 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 9..75 | 100 | | Minus |
