FMO02378.5prime Sequence
920 bp (920 high quality bases) assembled on 2008-05-14
> FMO02378.5prime
CAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCTCGGATCCG
GGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGCTTCACTTT
GCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGATGTGGATG
CGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAACTAGACAGG
GCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATATCCTTTTGT
GCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTCCGCCGGCG
ATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCGCAGTGACC
ACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTTCGCCGCCA
TCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGATGGTGGGCG
ATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGCAGCAGATC
TGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAGGAGAGCCA
CAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGGCCACGCCC
ACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGCAGTGCATT
GTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTATCGCAAAAT
CCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAACCGCAGTA
AGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACTCGTGCGAT
GGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAGGATACTCCAGCAGCAG
TATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCACCATCGAAG
AGGCAAGCTTTCTAGACCAT
FMO02378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9967-RC | 1628 | CG9967-RC | 609..1503 | 8..902 | 4475 | 100 | Plus |
| CG9967-RA | 1647 | CG9967-RA | 665..1559 | 8..902 | 4475 | 100 | Plus |
| CG9967-RB | 1783 | CG9967-RB | 764..1658 | 8..902 | 4475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2308886..2309293 | 902..495 | 2040 | 100 | Minus |
| 2L | 23513712 | 2L | 2310126..2310428 | 310..8 | 1515 | 100 | Minus |
| 2L | 23513712 | 2L | 2309516..2309712 | 497..301 | 955 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:35 has no hits.
FMO02378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:23 Download gff for
FMO02378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9967-RA | 635..1540 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:06 Download gff for
FMO02378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9967-RB | 758..1663 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:33 Download gff for
FMO02378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9967-RB | 758..1663 | 1..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:33 Download gff for
FMO02378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2308881..2309290 | 498..910 | 99 | <- | Minus |
| 2L | 2309516..2309702 | 311..497 | 100 | <- | Minus |
| 2L | 2310126..2310434 | 1..310 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:06 Download gff for
FMO02378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2308881..2309290 | 498..910 | 99 | <- | Minus |
| arm_2L | 2309516..2309702 | 311..497 | 100 | <- | Minus |
| arm_2L | 2310126..2310434 | 1..310 | 99 | | Minus |
