FMO02381.5prime Sequence
1192 bp (996 high quality bases) assembled on 2008-05-14
> FMO02381.5prime
CAGTCGACATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCCGCAAGCGC
ACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGCGAGAATGC
CTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTGGGATTTCA
CCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGTCGGAGTTC
ATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGCGGCTGCAC
CGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCTGGCCAAGA
AGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGGGCTATAGC
GTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGCACGCGCGA
TGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACACCATCGTC
GGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTCGCGACGAC
CTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGCTGGTTTGT
CATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCCACTGGGCA
CTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGTGCCTGTTC
CCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCCATGGGTGG
CAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATATCCGCGCA
CCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAGTGCTGCAG
GGAGCAGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCACGTGGTGCTC
AACATGGACGACACCATTGCCATCACCCAGAACTTCAGTTCGCAGACGAA
CTTCCCCTGCGTCTGGCACAAGACTGTTCGCGGCGGCCAAGTTGTCACGC
AAGTGGCTGCGCGTGCTGCGAGAACAGCGACCGGAGCTGGCCCAGATCGC
GATGTATTACTGAACGAGAGCACGGCTTCGCATCGAAGCTCCAGCAATCA
AGCTCCTCCTCGTCGAGCAGCTCCTCGTCTCGAGAGAGAAAAGCGACGAT
GCCGCCATCAACGTACAGCGACAGAAGTCTGACGCAAAAAAAGAAGCGGC
ATGCTGGCGCGATCCGGGTCGCGTCTCCGTGGGCGAAATCTA
FMO02381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 77..1159 | 9..1080 | 5135 | 98.9 | Plus |
| PSR-RA | 1590 | CG5383-RA | 77..1159 | 9..1080 | 5135 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361213..22362295 | 1080..9 | 4910 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib3 | 2883 | transib3 TRANSIB3 2883bp | 2222..2280 | 1138..1081 | 112 | 70 | Minus |
FMO02381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:27 Download gff for
FMO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5383-RA | 232..1321 | 1..1080 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:42 Download gff for
FMO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 70..1159 | 1..1080 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:03 Download gff for
FMO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 70..1159 | 1..1080 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:03 Download gff for
FMO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361213..22362299 | 1..1080 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:42 Download gff for
FMO02381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18186935..18188021 | 1..1080 | 98 | | Minus |
