FMO02382.5prime Sequence
1217 bp (1041 high quality bases) assembled on 2008-05-14
> FMO02382.5prime
CAGTCGACATGTCAGCCAGCGCAGTGATTCACTCCCTCGCTCAGCGACGG
CGCTCTCTTTCTCTTCCCCTCTCCAACGAACCAAAGAACTCGAAACTCCC
GCTTTCCCAACAACAACTACAACAGCAGCAGCATGGACACCACGAACAAC
AACAACGCCCATCTATGCTTATTGAGGATGAGGTTCACGGTGTAATCGAA
CTGTCGAGCCATATCCAAGAGATCGTCGAGCATCCACTCTTCCAGCGCCT
CAAACATGTCCACCAGTTGGGTCTCCTTCCGTGGGCCATCGATAAGAAGG
CCGATCACAAGCGATACGATCATTGCCTTGGAGCCTACAAAAGCGCGCAG
GATCACCTTAGGGCCATCGAACGTAATTCGCATTACGAGCCAAAGCTTCC
GGATTGGTGTCGTCAGGCGGTGGAGATAGCCGCTCTCCTTCACGACATTG
GTCACGGACCAATGTCACATGCCTGGGAGTTGGTGACCCACCATGAATTT
GATCACGAGGAAAACGCAATGGCCTGTGTGGATAAAATTTTTAAGGATGC
CCTCAATCAGGAGCTAGTCTCCTTGAGAGATGATGGTGGCGGGCGAGGTG
TTCAATTGATAAAGGCTTTGATATTGGGATCCAGTGAGAATCTGCCGTTC
CCCATGCTGGGACATACCTACATCTTTGATATTGTGCATAATCGTCGCTG
CGGATTGGATGTGGATAAATGGGATTATCTGCGGCGTGATAACAAGCGCC
TGAAAATACTCAGCTCTGCGGAAATGGACTTTGATGATGTATTTCTTCAG
GCTCGCATATCACCTGATGGTCAACGCATAGAGTATCGTTATGCTGACTA
TCATCGGGTATATCGCTTGTTCGAGGCGCGATCGCTGCTCCACGTAAAGG
CCTATCAATATCCGCTAACTTGTGCCATGGATGTATTTTGTCAGTGTAGT
ACAACGTATTGCCTCCAGAACTACTAAGTATTCGCCCCAAAGGATCCAAA
GTGGCTGAATGACGACGAGTATGTTTTAAATGTCATTGAAAAAGATCCTA
TAATCGAGAATATGTAAAAAACCTCCATCGACTCGTAGAGTTCCAGCACG
ACTGTTCCGATCGGACATAACGGTGAACAGATCAACCCTGGCACTTGCAG
CCTTAAATCGCAAGGAGTAGCTTCTCTTGCAATAAGGCCCAGAACGCTCC
AATTATCCCGAGTGGTA
FMO02382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fal-RD | 2128 | CG9670-RD | 380..1494 | 9..1118 | 5180 | 98.4 | Plus |
fal-RB | 1925 | CG9670-RB | 177..1291 | 9..1118 | 5180 | 98.4 | Plus |
fal-RC | 2519 | CG9670-RC | 927..1885 | 165..1118 | 4400 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19297519..19298105 | 504..1089 | 2455 | 97.1 | Plus |
3L | 28110227 | 3L | 19297272..19297448 | 327..503 | 870 | 99.4 | Plus |
3L | 28110227 | 3L | 19297046..19297212 | 165..331 | 835 | 100 | Plus |
3L | 28110227 | 3L | 19294943..19295098 | 9..164 | 780 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2584..2666 | 73..155 | 172 | 67.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3275..3323 | 104..155 | 145 | 78.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6829 | 108..155 | 141 | 77.1 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 515..573 | 92..153 | 141 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2541 | 108..162 | 140 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2385 | 79..156 | 138 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2430 | 108..156 | 137 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6878 | 109..156 | 132 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2400 | 71..156 | 130 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2379 | 108..156 | 128 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2442 | 108..156 | 128 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2484..2546 | 108..171 | 128 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6788 | 108..156 | 128 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6809 | 108..156 | 128 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6842 | 108..156 | 128 | 73.5 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 543..591 | 108..156 | 128 | 73.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1112..1160 | 108..156 | 128 | 73.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1157 | 109..159 | 122 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2490 | 108..156 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2880..2928 | 108..156 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6767 | 109..156 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1589 | 108..155 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2343 | 120..156 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2838 | 108..153 | 113 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2853 | 108..156 | 112 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2358 | 108..156 | 110 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2826 | 108..156 | 110 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6905 | 108..156 | 110 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6890..6938 | 108..156 | 110 | 69.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1121..1171 | 108..161 | 110 | 70.4 | Plus |
FMO02382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:13 Download gff for
FMO02382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9670-RA | 167..1304 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:15 Download gff for
FMO02382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fal-RB | 169..1306 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:52 Download gff for
FMO02382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fal-RB | 169..1306 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:52 Download gff for
FMO02382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19297277..19297448 | 332..503 | 100 | -> | Plus |
3L | 19294935..19295098 | 1..164 | 97 | -> | Plus |
3L | 19297046..19297212 | 165..331 | 100 | -> | Plus |
3L | 19297519..19298153 | 504..1130 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:15 Download gff for
FMO02382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19288035..19288198 | 1..164 | 97 | -> | Plus |
arm_3L | 19290146..19290312 | 165..331 | 100 | -> | Plus |
arm_3L | 19290377..19290548 | 332..503 | 100 | -> | Plus |
arm_3L | 19290619..19291253 | 504..1130 | 96 | | Plus |