FMO02384.5prime Sequence
1205 bp (1018 high quality bases) assembled on 2008-05-14
> FMO02384.5prime
CAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGGCCTACCAT
AAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAGGAACTGCA
GCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCAGGCCCAGC
GCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGCTGCAGCTG
CTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCCATGGACAA
GAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGTCGTCGATC
TGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCCGCGTGGCC
CTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAATAAGGTGGA
TCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTCCACATACG
AAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGGAGGTGATT
GAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGTATTGCCCA
GCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAAGACTTTGC
TGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTCGCGTCTCT
GGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGCATGGTTCG
AGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTATTTTCATGG
ACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGTTCCGGCGGCG
ATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAGCTGGACGGC
TTTGAGGCCACCAAGAACATCAAGGTGATCATGGGCCACCAATCGCATTG
ACATCCTGATCCCGCTCTGCTGCGTCCCGCCGTATTGATCGCAGATCGAG
TTCCCGCCACCAAACGAGGAGCGCGTCTGGACATCTTGAAGATCCACTCC
CGTAAGATGACCTCACGCGTGCATTAATCTGCCAAGATCCGCCAGCTAAT
GCCAGGCGCCATCAGGTGCGAAGTCAGGCGTCTGCACGAGCCCGCATGTA
TGCCCCTGGCCGAACGACGCTCATGTTCACCAGAAGACTCGAATGCCTGG
CAAGGTATGCAAGAACTGGAAGAAACTGTCCATCTCACAGAACCTGGTGG
AAGGC
FMO02384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt6-RA | 1404 | CG1489-RA | 127..1248 | 9..1120 | 5130 | 98 | Plus |
| Rpt6R-RA | 1445 | CG2241-RA | 290..1169 | 139..1016 | 1620 | 79.6 | Plus |
| CG1801-RC | 5303 | CG1801-RC | 16..182 | 1120..961 | 475 | 90 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21316547..21317453 | 170..1070 | 4000 | 98.6 | Plus |
| 3R | 32079331 | 3R | 30582521..30583322 | 971..170 | 1435 | 80 | Minus |
| X | 23542271 | X | 21316258..21316403 | 26..171 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:48 has no hits.
FMO02384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:16 Download gff for
FMO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1489-RA | 119..1228 | 9..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:08 Download gff for
FMO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt6-RA | 127..1236 | 9..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:09 Download gff for
FMO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt6-RA | 127..1236 | 9..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:09 Download gff for
FMO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21316178..21316195 | 9..26 | 100 | -> | Plus |
| X | 21316259..21316403 | 27..171 | 100 | -> | Plus |
| X | 21316549..21317495 | 172..1108 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:08 Download gff for
FMO02384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21187205..21187222 | 9..26 | 100 | -> | Plus |
| arm_X | 21187286..21187430 | 27..171 | 100 | -> | Plus |
| arm_X | 21187576..21188522 | 172..1108 | 97 | | Plus |
