FMO02385.5prime Sequence
953 bp (953 high quality bases) assembled on 2008-05-14
> FMO02385.5prime
CAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATCAATGGATT
GAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTTCGCACCCT
CTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGTGCAGGAGG
TAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGTTTCACGAC
CTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACCAACTACCT
GTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGAGACCGTGA
CCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCACCATCCTG
CGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGCTTCTACGA
CGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTACTTCACGG
ATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGCAGATCTTC
TGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGATCACATTCG
GGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCATGTGCGATC
TGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCTCGCCTCGT
GGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTTAACAACAC
AAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGATGGAGGGCT
ACAACTGGTGTCACGATCGCAATGTGGTCACAATATTCTCAGCGCCAAAC
TATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTGGATGATTC
ACTTAAATTTTCATTCCTACAATTTGATCCAGCACCCAGGCGCGGGGAGC
CTCATGTTACGCGAAGAACACCCGATTATTTCCTTGCAAGCTTTCTAGAC
CAT
FMO02385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mts-RC | 1507 | CG7109-RC | 260..1186 | 9..935 | 4635 | 100 | Plus |
| mts-RB | 3102 | CG7109-RB | 403..1329 | 9..935 | 4635 | 100 | Plus |
| mts-RA | 2051 | CG7109-RA | 260..1186 | 9..935 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7830460..7831026 | 109..675 | 2835 | 100 | Plus |
| 2L | 23513712 | 2L | 7831467..7831659 | 673..865 | 965 | 100 | Plus |
| 2L | 23513712 | 2L | 7828052..7828154 | 9..111 | 515 | 100 | Plus |
| X | 23542271 | X | 20422199..20422708 | 671..162 | 510 | 73.3 | Minus |
| X | 23542271 | X | 6372311..6372515 | 444..240 | 365 | 78.5 | Minus |
| 2L | 23513712 | 2L | 7831734..7831803 | 866..935 | 350 | 100 | Plus |
| X | 23542271 | X | 16558837..16558960 | 282..159 | 200 | 77.4 | Minus |
| X | 23542271 | X | 16567436..16567559 | 282..159 | 185 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:17 has no hits.
FMO02385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:29 Download gff for
FMO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7109-RA | 305..1242 | 1..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:50 Download gff for
FMO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mts-RA | 255..1192 | 1..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:48 Download gff for
FMO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mts-RA | 255..1192 | 1..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:48 Download gff for
FMO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7828047..7828153 | 1..110 | 96 | -> | Plus |
| 2L | 7830462..7831025 | 111..674 | 100 | -> | Plus |
| 2L | 7831469..7831659 | 675..865 | 100 | -> | Plus |
| 2L | 7831734..7831809 | 866..942 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:50 Download gff for
FMO02385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7828047..7828153 | 1..110 | 96 | -> | Plus |
| arm_2L | 7830462..7831025 | 111..674 | 100 | -> | Plus |
| arm_2L | 7831469..7831659 | 675..865 | 100 | -> | Plus |
| arm_2L | 7831734..7831809 | 866..942 | 97 | | Plus |
