FMO02386.5prime Sequence
1224 bp (999 high quality bases) assembled on 2008-05-14
> FMO02386.5prime
CAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTAGTTGTAAA
CAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCCGCCCACAG
CTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCAGTTCCTCC
CGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAAAGACGTAC
TGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGCCTCGTTCG
AAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAACCTGGGAAG
ATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACGATCCCAAG
TCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAATGGATATAG
TTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGGGGGTGGAA
ACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGTATCTTCTG
TACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTATAACTCCCA
GGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAATCAGAGTG
ACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCTTGGTCAGG
GATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCGGAGGTGGT
GGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGACAACCCGG
CAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACATGGATCTC
TTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAGCGTTCGAG
GACAAAGCGCCAAAGTCCGGGGCGCTCCATCCTCTGCCAGACGACATCGC
AGTTCATCACCCCGCAGGCGGCACTGAATAGCCGCGGAAACTGGATGTTT
GTGGTCACGAGCAGAACACCGCTCGCAAATGTTCAAGCGAACCTTGCGCC
CTCGACCACCTGCTCGAACTTGTGCGAATTGCCCAACGGCTACAACTCGA
AATGCAGCAAAGTTTGTGCAAAAACGCTTAATTGCCCTCCAGCAACGTCA
AATCTGTAACGACACGTCTATTCAAGATATGCTTGTCTCTCGCACAGATA
TGCGCTCAATGCAACTTCTAGACACATTGCTTTGGCCGCGGTCCAGAAAG
GTCTTACTCAGTCCTAATCTCATA
FMO02386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz5-RA | 1996 | CG9972-RA | 383..1471 | 9..1092 | 5155 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2885922..2886408 | 976..491 | 2370 | 99.6 | Minus |
| 3L | 28110227 | 3L | 2886686..2886952 | 493..227 | 1335 | 100 | Minus |
| 3L | 28110227 | 3L | 2888888..2889045 | 228..71 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 2889101..2889163 | 71..9 | 315 | 100 | Minus |
| 3L | 28110227 | 3L | 2884166..2884259 | 1092..1001 | 310 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:55 has no hits.
FMO02386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:31 Download gff for
FMO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9972-RA | 372..1476 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:12 Download gff for
FMO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz5-RA | 374..1478 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:45 Download gff for
FMO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz5-RA | 374..1478 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:45 Download gff for
FMO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2884159..2884259 | 1001..1097 | 92 | <- | Minus |
| 3L | 2885896..2886408 | 491..1000 | 98 | <- | Minus |
| 3L | 2886689..2886952 | 227..490 | 100 | <- | Minus |
| 3L | 2888890..2889044 | 72..226 | 100 | <- | Minus |
| 3L | 2889101..2889170 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:12 Download gff for
FMO02386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2884159..2884259 | 1001..1097 | 92 | <- | Minus |
| arm_3L | 2885896..2886408 | 491..1000 | 98 | <- | Minus |
| arm_3L | 2886689..2886952 | 227..490 | 100 | <- | Minus |
| arm_3L | 2888890..2889044 | 72..226 | 100 | <- | Minus |
| arm_3L | 2889101..2889170 | 1..71 | 94 | | Minus |
