FMO02387.5prime Sequence
1221 bp (1052 high quality bases) assembled on 2008-05-14
> FMO02387.5prime
CAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGATCATGGAG
AGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCTAGTGCAGT
TGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCGAAGAAACA
CCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGGAGCTAGAG
CTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATATCGCCATGG
ATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGGCTGGGGCT
GCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGATCGACTTA
CATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGATGCCACCTA
CCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTTCTACTCCA
TACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGGTCGGCGAG
TGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTAGTGCGCTT
CGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAGCACAGTGG
TATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGTGGAAGCCA
CTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATTAACCCGCT
TTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAGTTGTGGCA
TGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCTATGTGGAC
GATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACGGGCGCCGT
GGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGACCTACCATC
AAAGCATGCTGCTCGCCTGAACTTCTCCGCCATGGACCCCTCGCTGGCGG
TTTGTTTCCTCTGCAGACAGTGAAAGTTTCGAGTCCCTGTTAACCAAGTG
AAGGAGGAGGTGCTCAGCTCTGCTCGCCTGGCGCTCTCGAGAATCAGTCA
AACCCGCCGTTCGAATGGAAACCCACGGAGGAAATCGACTGGCCACATGC
GGACATCGATGCTGGCGGCACCTCGGAATCGACTCTTTGGCCATATGAAA
GAGCGCAGGGAACCGGCACTGCGCGTGTAACTGCGCGCCCTATGGCAGCA
GCAGCGCACAAGCACCAACAT
FMO02387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-RA | 2076 | CG4428-RA | 334..1502 | 9..1161 | 5210 | 97.4 | Plus |
| Atg4a-RB | 4075 | CG4428-RB | 334..1482 | 9..1145 | 5200 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1082116..1082603 | 612..1094 | 1905 | 95.5 | Plus |
| 2L | 23513712 | 2L | 1081577..1081920 | 192..535 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 1081244..1081427 | 9..192 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 1081973..1082056 | 532..615 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:10 has no hits.
FMO02387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:32 Download gff for
FMO02387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4428-RA | 326..1445 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:50 Download gff for
FMO02387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 328..1447 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:23 Download gff for
FMO02387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4a-RA | 328..1447 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:23 Download gff for
FMO02387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1081238..1081427 | 1..192 | 98 | -> | Plus |
| 2L | 1081578..1081920 | 193..535 | 100 | -> | Plus |
| 2L | 1081977..1082056 | 536..615 | 100 | -> | Plus |
| 2L | 1082120..1082626 | 616..1116 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:50 Download gff for
FMO02387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1081977..1082056 | 536..615 | 100 | -> | Plus |
| arm_2L | 1081238..1081427 | 1..192 | 98 | -> | Plus |
| arm_2L | 1081578..1081920 | 193..535 | 100 | -> | Plus |
| arm_2L | 1082120..1082626 | 616..1116 | 95 | | Plus |
