FMO02388.5prime Sequence
1183 bp (1047 high quality bases) assembled on 2008-05-14
> FMO02388.5prime
CAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCTTTCGGCTC
TTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCCCTGCGTTT
GGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCATGAGCTTC
AGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAACGGACAAG
CATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATACGTGAATGG
CATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACTCTGCCAGT
TTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAGCCATGCTC
AGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAACAAGCATGG
TGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGATGACTCGT
TTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTCCCAAACGT
GACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTTCGTAAGGT
TATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCAGCTGGAGA
AGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATGAACTAGAA
CCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCTCGTCGCAC
TAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCAATTTGGCA
TTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTATGGAACCC
GTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTATGCCTACTA
TTGTGTCACTAAGAGGGAATATATGATGGAGGATGTGAAGAATCGCGAAT
TCTCACTTTCCCTTTATAGGAACGCCAAAAAGGTTCAGTTCGATGTAGAC
ACTACACGAACTGAAGCGAAAGTCGGCGGAGTTGAGTACAATCTTAGAAG
GATCACGACCGCTCAACATGCATGCATCGCATTTGGTCGACCAGGAAACA
CGCCACACTTACTGAGAAGGCGACGAATACCTGCAGCTTTCTAAACATTC
GTGGCGCGGCCAGTATGCTAACTAACTATCTATCTATCACTAGCCTAGGA
AATCTGCTAGACATAGGCTGTGAATCTCACAAT
FMO02388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18769-RD | 1811 | CG18769-RD | 282..1342 | 8..1056 | 5000 | 98.8 | Plus |
| CG18769-RB | 2623 | CG18769-RB | 1094..2154 | 8..1056 | 5000 | 98.8 | Plus |
| CG18769-RC | 1778 | CG18769-RC | 249..1309 | 8..1056 | 5000 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6590602..6590835 | 221..454 | 1170 | 100 | Plus |
| 3L | 28110227 | 3L | 6591212..6591418 | 661..867 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 6551832..6551949 | 8..125 | 590 | 100 | Plus |
| 3L | 28110227 | 3L | 6591478..6591620 | 866..1005 | 550 | 97.2 | Plus |
| 3L | 28110227 | 3L | 6590891..6590999 | 452..560 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 6591055..6591160 | 557..662 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 6562321..6562418 | 125..222 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:18 has no hits.
FMO02388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:01 Download gff for
FMO02388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RA | 157..1227 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:58 Download gff for
FMO02388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RC | 239..1309 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:39 Download gff for
FMO02388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RC | 239..1309 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:39 Download gff for
FMO02388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6590894..6590999 | 455..560 | 100 | -> | Plus |
| 3L | 6591059..6591160 | 561..662 | 100 | -> | Plus |
| 3L | 6591214..6591417 | 663..866 | 100 | -> | Plus |
| 3L | 6591479..6591680 | 867..1056 | 93 | | Plus |
| 3L | 6551822..6551949 | 1..125 | 96 | -> | Plus |
| 3L | 6562322..6562418 | 126..222 | 100 | -> | Plus |
| 3L | 6590604..6590835 | 223..454 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:58 Download gff for
FMO02388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6583704..6583935 | 223..454 | 100 | -> | Plus |
| arm_3L | 6583994..6584099 | 455..560 | 100 | -> | Plus |
| arm_3L | 6584159..6584260 | 561..662 | 100 | -> | Plus |
| arm_3L | 6584314..6584517 | 663..866 | 100 | -> | Plus |
| arm_3L | 6584579..6584780 | 867..1056 | 93 | | Plus |
| arm_3L | 6544922..6545049 | 1..125 | 96 | -> | Plus |
| arm_3L | 6555422..6555518 | 126..222 | 100 | -> | Plus |
