FMO02389.5prime Sequence
1230 bp (1054 high quality bases) assembled on 2008-05-14
> FMO02389.5prime
CAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGATCAGTGAG
TACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAGTACCGGAA
GAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGTGCTGGGCG
GGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGCTGCGCACG
CAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCCTACAACTC
CAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCCCTACGCCT
GCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCGACGAGCGA
AAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGACAGCAGCAC
GCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGAGGAGTACC
TCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGAAACTTATC
GAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAGCTAGAGGA
GGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCGCTTTGTAA
GCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATCATCAGACG
CTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTCAGCTTCCA
GGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAACCCAAAGCA
CGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTAAGATCCAG
CGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAGGAGCACAC
GCAACTGCATCCGCCGCCGGTCAAACGCATGTACTACGAAGCCAGTCCAG
CGTCGCACAACACCACCTCCATCCTGTCCCCTGCACTGGAAAGCAGTGCC
AATGGCACAGCAGCAGTGTGCTGACCACCTCGCCCGGAATAACCATGAGT
AACTTGCGCCTGCCCAGGTGAACCGCCGCCCAAACCAGCCCAGGCCCAGC
ATCCCCAGTCCACCCTCCGCCCACATTGTCAGCTGCCGCCAGGCGCGCGA
CGAGTTGCAACGAATGGAGAGTTACTTGCCAACGAGAGTGGCGCCCACAT
CAGCAATCGGAGGTTCTTGTGCCTCTCTAAGACACCGCATCACACGTAAT
CTCTCAAGGCATAGCAATGGGCCAAAAATA
FMO02389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11504-RC | 1788 | CG11504-RC | 380..1565 | 9..1192 | 5370 | 97.7 | Plus |
| CG11504-RA | 1792 | CG11504-RA | 384..1569 | 9..1192 | 5370 | 97.7 | Plus |
| CG11504-RB | 1856 | CG11504-RB | 448..1633 | 9..1192 | 5370 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29998347..29999481 | 9..1137 | 5090 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 20:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 382..472 | 122 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 384..476 | 120 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 384..470 | 120 | 65.9 | Plus |
FMO02389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:35 Download gff for
FMO02389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11504-RC | 483..1658 | 9..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:35 Download gff for
FMO02389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11504-RB | 448..1623 | 9..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:59 Download gff for
FMO02389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11504-RB | 448..1623 | 9..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:59 Download gff for
FMO02389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29998347..29999522 | 9..1181 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:35 Download gff for
FMO02389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25824069..25825244 | 9..1181 | 97 | | Plus |
