Clone FMO02390 Report

Search the DGRC for FMO02390

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:23
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCAH2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02390.5prime Sequence

1198 bp (1039 high quality bases) assembled on 2008-05-14

> FMO02390.5prime
CAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTGTCATTGCT
CCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTTGGCTACGA
GGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCGCTGCAGTG
GAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCGTGGAGAAG
AAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCCGACAATCT
TCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAGCTACAACG
AGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGAAAACTCCT
CTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAGAACGATAC
GATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGCCGAGTTGC
ACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCGCCCTGGAC
AAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTGGGCGACAA
ATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCAGATTGACC
GCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGGGCGAGTAC
ATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCTCTGACCAC
ACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAACGCCCATTG
ACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAGCCAACGAT
GATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAACGATCGCAC
CTTGTACAAGAACTACATAGAAATTCCGATTCACACATGGGCTCGATTCC
ACTCGTCGATGCGGAAATGCGGCTGGCAGTGGAGGGCACAAGCCGCAGCA
GTGCTGTGCCCTCGTGTCTCGCTGCATGTCAGGACTCATTTCCGGGGTTT
TGCAGCTTTCTAGACATTCGTTGGCGCGGCGGCCCAGGTAGTGGTCAATC
ATAATCATATCATATCTATCCCAAACTAGCCTAGAGAATCCTGGTATGAC
TATGCTTGGAATTCTCCACCAATAAAAACTCGGCGCCACCGGAGGTTCTG
AACAATCGAGGGGAGTCTGAGGCAATATATGGAAATCTCACTACACAC

FMO02390.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1830 CG6906-RA 222..1227 8..1001 4730 98.8 Plus
CAH2-RB 1619 CG6906-RB 70..1016 67..1001 4435 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181675..12182151 66..542 2385 100 Plus
3L 28110227 3L 12182208..12182437 538..767 1150 100 Plus
3L 28110227 3L 12182495..12182691 764..957 835 98.5 Plus
3L 28110227 3L 12180097..12180155 8..66 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:47:04 has no hits.

FMO02390.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:36 Download gff for FMO02390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6906-RA 219..1229 8..1008 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:20 Download gff for FMO02390.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 222..1232 8..1008 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:59 Download gff for FMO02390.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 222..1232 8..1008 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:59 Download gff for FMO02390.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12180097..12180155 8..66 100 -> Plus
3L 12181676..12182148 67..539 100 -> Plus
3L 12182210..12182437 540..767 100 -> Plus
3L 12182499..12182720 768..981 96 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:20 Download gff for FMO02390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12173197..12173255 8..66 100 -> Plus
arm_3L 12174776..12175248 67..539 100 -> Plus
arm_3L 12175310..12175537 540..767 100 -> Plus
arm_3L 12175599..12175820 768..981 96 == Plus