FMO02391.5prime Sequence
1191 bp (1017 high quality bases) assembled on 2008-05-14
> FMO02391.5prime
CAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCATTGCCGTC
GCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTGCCGGCCGG
TAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACGTCGTCTAA
TGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACCACTTCGAG
CAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGCCAGCGTCA
TCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAAGTCGATGC
AGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCCTCAAGGAC
TTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCCAGCTCGGA
CGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCCCTACATGA
TCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCACCGCGTCG
GTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCCATTGGCGA
TGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGATCTTGTCCA
CGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTGGATCTGGA
TCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTATCGATATC
CCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATCTAGCAAGA
ACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCAGTGTTCGT
GCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCCGACGGCAA
GCCGGAACCAAAAAGCTCGGAGGCATTGGAGAATATGTTTAATGCCATAC
GTCCGTTTGCCAAGTTGGTGGTGTCCGATGTCCTGGAGCTGGATATCAGA
TCGAAATTTGGAGCGTCAAACTCTTCGTCGTGTTCTGACTACTTCAGACA
CTCTGTACCATCGTGGGCGTGCCGTAAGTTCCGCATGGTGCTGCGGATGG
ATCGATTTGAACACGCTAATGCCATCTGGCAGAAAACTTCGAGGTCTTGA
CATAGCTGCAAGTCATGCGCTAAAGACAGACAAGGCGAGCGTTTGACTTC
GGAACGCTATTTCGATTACCAAGAAGACACGGGTGAAAACC
FMO02391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| exu-RD | 2631 | CG8994-RD | 152..1272 | 9..1106 | 4980 | 97.4 | Plus |
| exu-RC | 2621 | CG8994-RC | 142..1262 | 9..1106 | 4980 | 97.4 | Plus |
| exu-RB | 1988 | CG8994-RB | 142..1262 | 9..1106 | 4980 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20669235..20669897 | 970..310 | 3215 | 99.7 | Minus |
| 2R | 25286936 | 2R | 20669979..20670133 | 311..157 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 20670201..20670350 | 158..9 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:20 has no hits.
FMO02391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:37 Download gff for
FMO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8994-RC | 23..1124 | 2..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:51 Download gff for
FMO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exu-RB | 137..1238 | 2..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:30 Download gff for
FMO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exu-RB | 137..1238 | 2..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:30 Download gff for
FMO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20669101..20669895 | 312..1086 | 97 | <- | Minus |
| 2R | 20669979..20670131 | 159..311 | 100 | <- | Minus |
| 2R | 20670201..20670355 | 2..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:51 Download gff for
FMO02391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16556606..16557400 | 312..1086 | 97 | <- | Minus |
| arm_2R | 16557484..16557636 | 159..311 | 100 | <- | Minus |
| arm_2R | 16557706..16557860 | 2..158 | 97 | | Minus |
