FMO02392.5prime Sequence
1061 bp (1049 high quality bases) assembled on 2008-05-14
> FMO02392.5prime
CAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGCTAGCCAGG
GCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACCATGAACGA
ATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAACAACAGCA
TTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAGAGAAACGG
AGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAGGGACAGGA
TATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGCCATTGAGG
AGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGCAAATCTAC
GGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGATTGCACCGT
GCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACATCTCCAGCG
GCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTCCGGAAATC
GATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAGTTGGTTCA
GTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTCGGACATGC
CGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATCCCTACTGC
CAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCGCCGATGAT
GCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTGGCACTACA
TCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGGGCTACACC
TCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTCCGACGCAC
CGATGCCGAGTGTGAATGTGGTTCTAATTCCGATGCCGTCTGCTCCTGCG
ATCTGGGTGGCTATCGGCCCGCCTGGGAGCTCCAGGATGCCACCATGGAG
CGTGCTGGTCGCCTGCCCAGGAGGCAAGCTTTCTAGACCATTCGGTTGGC
GCGCGGGCCCAGGTAGTGTCATATCATATCATAATCATTAATCATAATCA
CACTAGGCCTA
FMO02392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4407-RA | 1338 | CG4407-RA | 175..1140 | 7..972 | 4830 | 100 | Plus |
| CG4407-RB | 1235 | CG4407-RB | 86..1037 | 21..972 | 4760 | 100 | Plus |
| CG16848-RA | 1198 | CG16848-RA | 550..670 | 679..799 | 185 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12902316..12902967 | 671..20 | 3260 | 100 | Minus |
| X | 23542271 | X | 12901551..12901853 | 972..670 | 1515 | 100 | Minus |
| 2L | 23513712 | 2L | 13413068..13413188 | 679..799 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:14 has no hits.
FMO02392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:39 Download gff for
FMO02392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 136..1116 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:27 Download gff for
FMO02392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 169..1149 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:23 Download gff for
FMO02392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 169..1149 | 1..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:23 Download gff for
FMO02392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12901551..12901851 | 672..972 | 100 | <- | Minus |
| X | 12902316..12902966 | 21..671 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:27 Download gff for
FMO02392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12795584..12795884 | 672..972 | 100 | <- | Minus |
| arm_X | 12796349..12796999 | 21..671 | 100 | <- | Minus |
