FMO02393.5prime Sequence
831 bp (831 high quality bases) assembled on 2008-05-14
> FMO02393.5prime
CAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAGCCCTCAAC
CTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACACGCGATACT
GAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATTTCCGGTGC
CCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATACTCACCGTG
TCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGATGCCATCAC
CCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCAAACGCAAC
GTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGGTCCAGGAT
GCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGATGTCGACGA
CTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGATAGGCAACA
TTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGCCCAAAAAG
AAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCGCTGGTGCC
CAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAGCCACAAGC
TGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAATGCGCTTC
GATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGACGTGCTACT
GCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGACAAGATAT
CTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTTCGCCCTCG
GCACTTTCCTACGCAAGCTTTCTAGACCATT
FMO02393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rogdi-RA | 2028 | CG7725-RA | 134..937 | 9..812 | 4020 | 100 | Plus |
| rogdi-RB | 2335 | CG7725-RB | 441..1244 | 9..812 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17052955..17053285 | 416..746 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 17052721..17052878 | 258..415 | 790 | 100 | Plus |
| 3L | 28110227 | 3L | 17052002..17052135 | 125..258 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 17051860..17051933 | 53..126 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 17054296..17054363 | 745..812 | 340 | 100 | Plus |
| 3L | 28110227 | 3L | 17051410..17051454 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:35 has no hits.
FMO02393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:40 Download gff for
FMO02393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7725-RA | 122..932 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:20 Download gff for
FMO02393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rogdi-RB | 434..1244 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:57 Download gff for
FMO02393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rogdi-RB | 434..1244 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:57 Download gff for
FMO02393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17052003..17052134 | 126..257 | 100 | -> | Plus |
| 3L | 17052721..17052878 | 258..415 | 100 | -> | Plus |
| 3L | 17051403..17051454 | 1..53 | 92 | -> | Plus |
| 3L | 17051861..17051932 | 54..125 | 100 | -> | Plus |
| 3L | 17052955..17053285 | 416..746 | 100 | -> | Plus |
| 3L | 17054298..17054363 | 747..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:20 Download gff for
FMO02393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17047398..17047463 | 747..812 | 100 | | Plus |
| arm_3L | 17044503..17044554 | 1..53 | 92 | -> | Plus |
| arm_3L | 17044961..17045032 | 54..125 | 100 | -> | Plus |
| arm_3L | 17045103..17045234 | 126..257 | 100 | -> | Plus |
| arm_3L | 17045821..17045978 | 258..415 | 100 | -> | Plus |
| arm_3L | 17046055..17046385 | 416..746 | 100 | -> | Plus |
