FMO02394.5prime Sequence
1211 bp (1004 high quality bases) assembled on 2008-05-14
> FMO02394.5prime
CAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATACGCGCCATC
GAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTGGAGACCTT
CGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCAGGCCAAGA
TGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCCTGACGGTT
GTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAGATCGGACG
ACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTCGGTGAAGT
CCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACATCGAGGGC
ATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTCTTCAATGC
CGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGCTTTGGCCG
TTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCCCAACTGGT
GGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCGCTTATCCT
CGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGACTTTTACA
AGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGCTCTCTATT
CAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTATCGCAAGAA
GTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAGCCTGAGCA
CCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGGTGCAAAAA
TCTGTGGGTCGCCTGAGCTTCAACGATTTCCTGCTGAGCAGTGAGGAGGA
GCGAACGAAGCAGTTTCCCGACCTGGAACGTTTTAATACCGCTACCCTGG
AGAGCACTACTTTGATCGCGATGTGGAGAGGCTTCATGACGCAGTCCGCC
AACATCTTTGCCAGCAAGACCAGAAATCGCTGCTGCTGGCACAAGTGGGC
CATATGACACACCCCTCGGTGTACTCGGTTTGGTGCTCCTGTGATACGGA
CAGCCCAGGAGCTGGTGGAAGCGCATTGTTGTTCTCTACGGATCGGACTG
GGCTGCCTCAGGTACTCGATCAGCGTGACCAGGAGGCATCTGCATCGAAG
TGGCTCGAACTTGAACACGTAAGGTTGTCTGATTTCCGGGAGAAGGGTGT
GTCTCTGAACA
FMO02394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmgs-RF | 1900 | CG4311-RF | 137..1291 | 8..1143 | 5120 | 97.4 | Plus |
| Hmgs-RE | 1803 | CG4311-RE | 40..1194 | 8..1143 | 5120 | 97.4 | Plus |
| Hmgs-RD | 1879 | CG4311-RD | 116..1270 | 8..1143 | 5120 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16339479..16340465 | 8..990 | 4755 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 19:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1400..1457 | 287..344 | 110 | 65.5 | Plus |
FMO02394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:28 Download gff for
FMO02394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4311-RC | 162..1327 | 1..1149 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:00 Download gff for
FMO02394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmgs-RD | 112..1277 | 1..1149 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:41 Download gff for
FMO02394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmgs-RD | 112..1277 | 1..1149 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:41 Download gff for
FMO02394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16339475..16340640 | 1..1149 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:00 Download gff for
FMO02394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12226980..12228145 | 1..1149 | 96 | == | Plus |
