FMO02401.5prime Sequence
951 bp (951 high quality bases) assembled on 2008-05-23
> FMO02401.5prime
TTTTATACAAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGA
TGTAGCCTTCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGT
CCCGTGGGGCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAG
GGATTCGTGAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACAC
TTTCGTGGAGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGC
GGTCGCCCAAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAAC
TTCATTGATCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGT
GGCCTCCTGGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGG
ATGACTCGCAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATG
GCAAACTACGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGG
GAAAAAGAAGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTG
GTGTCCAGCACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGC
AACCTAAAGGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTA
CGAGATCCTTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGG
ACATGGAGGTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAAC
GGATATCTGCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCT
CTTCCTGGAAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCA
ACTTTAAGTCCTTGTTCCCGGCCATTGAAATTGAACAAGCCAAGCGAGGA
ACTTGGCAGCTTTCTTAGACCATTCGGTTGGCCGCGCGGGCCCAGGTAAG
T
FMO02401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11796-RB | 1518 | CG11796-RB | 574..1450 | 25..901 | 4370 | 99.9 | Plus |
| CG11796-RA | 1301 | CG11796-RA | 357..1233 | 25..901 | 4370 | 99.9 | Plus |
| CG5872-RB | 1866 | CG5872-RB | 1730..1796 | 901..835 | 320 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20438364..20439019 | 835..180 | 3280 | 100 | Minus |
| 3L | 28110227 | 3L | 20439077..20439232 | 180..25 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 20438234..20438300 | 901..835 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:30 has no hits.
FMO02401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:15 Download gff for
FMO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11796-RA | 353..1234 | 25..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:51 Download gff for
FMO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11796-RA | 357..1238 | 25..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:44 Download gff for
FMO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11796-RA | 357..1238 | 25..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:44 Download gff for
FMO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20438365..20439018 | 181..834 | 100 | <- | Minus |
| 3L | 20439077..20439240 | 15..180 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:51 Download gff for
FMO02401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20431465..20432118 | 181..834 | 100 | <- | Minus |
| arm_3L | 20432177..20432340 | 15..180 | 95 | <- | Minus |
