FMO02403.5prime Sequence
1205 bp (986 high quality bases) assembled on 2008-05-23
> FMO02403.5prime
CAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACCGTAACGTT
TTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTTGTCTGCGC
TAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCGCATTCCGG
TCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACTTGACCATG
CTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTTAGCACCAT
AGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCCGCCGGGCA
ATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTCAAAAGCGA
CCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATCTTGAGTGA
GGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCGGATGCGCA
CCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACCGTCGACTA
TCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACCAGTATCGA
CCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGTGCAAATAC
TATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAAGTACTTTG
GTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAATGATCCTGA
GACCCCGAAAACAACAGTTCTTTCCGGGAATAGCAGCAGCACTTCTGTGA
CAGACGTAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGATCTCAACCTT
CAATTAGTGGCACAAAATTGTCGCGCTGTGCCCATCGGGTTTGGGGATTA
GGCCAGCTTACCATACCTCTGGAGGAGAATCCGATGTGAGAATGCCTTCG
TGGTCGGACTATGTGGCAGTCCCTTTATGCCTGCAATCACAATGAGTCAA
TCTCTGGCGCACGATTCAGCTCACTACTTCCCGACCCACAGCAAACATCA
ATACTTGGGGATCACAAATAACTGATGTCAGAAAACGATGAGTATGAGAG
TTCAGAAGTCCAGGAAACCATTGAAATAATTTGGCATAGCCAGCAGCAGC
AATCCGATGTTTAGAGATGCCGAGCGCACTAATTTAGACTTTTAAGCAGC
TTCCGAACATTCCTGGGCGCCGTACAGATAATGGTCATAATCCTTGCTAT
ATCTA
FMO02403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-RA | 1328 | CG5538-RA | 85..1241 | 9..1144 | 4935 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12448132..12448791 | 338..995 | 2935 | 98.6 | Plus |
| 3R | 32079331 | 3R | 12447737..12448066 | 9..338 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:40 has no hits.
FMO02403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:27 Download gff for
FMO02403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 79..1177 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:20 Download gff for
FMO02403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 79..1177 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:42 Download gff for
FMO02403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 79..1177 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:42 Download gff for
FMO02403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12447731..12448066 | 1..338 | 98 | -> | Plus |
| 3R | 12448133..12448895 | 339..1088 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:20 Download gff for
FMO02403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8273453..8273788 | 1..338 | 98 | -> | Plus |
| arm_3R | 8273855..8274617 | 339..1088 | 96 | | Plus |
