FMO02404.5prime Sequence
1200 bp (938 high quality bases) assembled on 2008-05-23
> FMO02404.5prime
CAATCCACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTGCCACCAAG
TTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGCTGGCAAAA
GGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCATCAACGATG
GCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCGGTCCCTTC
TGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTTGAGGCACA
TCATCTGACCACGGCTCCCGAAAAAATGATCGCCAAATACAAGGTGAGGG
ATGCGGCTGAACCCATAATCTACACACTGACCTTGGAGGAGGGCGGATTC
TACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACCATAGACAA
GCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGTTGTGTCGC
TCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTTTGGCTTTG
GTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCCCACAACTA
CTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCTGGGCATGA
TGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACCACATCTAT
CCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCCTTGCTGTG
CTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTATGTGTCCT
GGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATACAAATGGGC
ACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTACTGGCACGA
CCTACTGCCACTGACTATACCCATTGCCATATACCTGGGAACCGGGGGAT
CTTTAGGCATTTGGATCTGCGTGCGCAGTGGCTCGCGATGACGTCGATAG
CCAGCTTTAGCTTCTGCTTGATTGATCTGAATGCAGCGCATCACGATCCG
GAAATCTATCACGAGGCTGTATGCCAATCTTGAGATCGTGACTGGAGTTA
CTTCCAGGGGAACACGATATCGAACCGCGGGATCTCAAGGTGCCAGTTCT
TGTGCTCACCACTTGGTGACAGGGACTCACACATCCTTCCCGACCTGGAT
CTGGTCTGACGACTTTCGGGCTTACAAACTCCAAGAGTTCAAGGGTGTTT
FMO02404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyt-b5-r-RB | 1557 | CG13279-RB | 90..1242 | 9..1151 | 5135 | 97.1 | Plus |
| Cyt-b5-r-RA | 1465 | CG13279-RA | 90..1242 | 9..1151 | 5135 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16790219..16790632 | 422..9 | 2040 | 99.5 | Minus |
| 2L | 23513712 | 2L | 16789517..16789899 | 805..423 | 1915 | 100 | Minus |
| 2L | 23513712 | 2L | 16789181..16789445 | 1068..805 | 1045 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:46 has no hits.
FMO02404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:28 Download gff for
FMO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13279-RA | 83..1147 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:46 Download gff for
FMO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-r-RA | 86..1150 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:40 Download gff for
FMO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-r-RA | 86..1150 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:40 Download gff for
FMO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16789517..16789899 | 423..805 | 100 | <- | Minus |
| 2L | 16789233..16789444 | 806..1016 | 98 | <- | Minus |
| 2L | 16790219..16790636 | 1..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:46 Download gff for
FMO02404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16789233..16789444 | 806..1016 | 98 | <- | Minus |
| arm_2L | 16789517..16789899 | 423..805 | 100 | <- | Minus |
| arm_2L | 16790219..16790636 | 1..422 | 98 | | Minus |
