FMO02405.5prime Sequence
1203 bp (1027 high quality bases) assembled on 2008-05-23
> FMO02405.5prime
CAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGATACAGTAC
TTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCGGACTATGC
ACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGATCTGCCAA
TGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGGTTTTGACA
TGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAACTCCCACAT
GGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCCATTTGGAG
CCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACACAAGATATG
AAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTCAAGAGAAG
TGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGCGGATGAGG
AAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTGAAGATTTC
CGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCTTCACCCGA
TGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCGTGTATATT
TCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGCCCAATACT
GCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAGTTTCGTAG
GAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCATTGGCGATG
TAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGAGCAATGTG
GTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGCTCTAGATGTG
GACTTTGAGAGTTTGAGCTAACCTCCACAAATGGTGTGCCGACGTGGTGG
TGGCATCGAGATCACTTACGACAGAAGCACCTAAAGTCCCGCCCACCGCC
ATCGATGGAGTAATCCCTTCTGGCTTGCTTTCAGAAAGCTACCGATGAGA
TGCACATATCATCAAACCGCAAATATTTACCGGAGACTGATAGCAGAATA
ATCTGCGTGCATCCCAGGTTTGGGCTCCTCACCCATGAATATAACCTTTT
ATTGCCTCACGATACCGATGAGTTCATTCAGCGGAATTCTATTGGCGGAG
GCGAATTCCGAAATATGCACTTGGGCAAGTTCCAGGCTTCATAACCATTT
GCT
FMO02405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6465-RA | 1377 | CG6465-RA | 92..1248 | 9..1147 | 5130 | 97.2 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 632..727 | 599..694 | 240 | 83.3 | Plus |
| CG6726-RC | 2911 | CG6726-RC | 632..727 | 599..694 | 240 | 83.3 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 1808..1932 | 238..362 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10676650..10676995 | 444..99 | 1730 | 100 | Minus |
| 3R | 32079331 | 3R | 10676109..10676377 | 859..592 | 1295 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10676440..10676589 | 593..444 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 10677070..10677160 | 99..9 | 455 | 100 | Minus |
| 3R | 32079331 | 3R | 10675902..10676036 | 1002..873 | 425 | 96.3 | Minus |
| 3R | 32079331 | 3R | 23092608..23092703 | 599..694 | 240 | 83.3 | Plus |
| 3R | 32079331 | 3R | 23093968..23094092 | 238..362 | 190 | 76.8 | Plus |
| 3R | 32079331 | 3R | 23098473..23098537 | 607..671 | 190 | 86.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:47 has no hits.
FMO02405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:16 Download gff for
FMO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6465-RA | 4..1167 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:28 Download gff for
FMO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6465-RA | 85..1248 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:18 Download gff for
FMO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6465-RA | 85..1248 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:18 Download gff for
FMO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10675903..10676036 | 873..1001 | 96 | <- | Minus |
| 3R | 10676094..10676377 | 592..872 | 98 | <- | Minus |
| 3R | 10676442..10676588 | 445..591 | 100 | <- | Minus |
| 3R | 10676650..10676994 | 100..444 | 100 | <- | Minus |
| 3R | 10677070..10677166 | 1..99 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:28 Download gff for
FMO02405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6501625..6501758 | 873..1001 | 96 | <- | Minus |
| arm_3R | 6501816..6502099 | 592..872 | 98 | <- | Minus |
| arm_3R | 6502164..6502310 | 445..591 | 100 | <- | Minus |
| arm_3R | 6502372..6502716 | 100..444 | 100 | <- | Minus |
| arm_3R | 6502792..6502888 | 1..99 | 96 | | Minus |
