FMO02406.5prime Sequence
1252 bp (1028 high quality bases) assembled on 2008-05-23
> FMO02406.5prime
ATTATACAAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTC
GTCTTAGCTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCC
TCGTGGGCGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGG
AGCAGCAGACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCG
AAGCTGGCCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGAT
TCTGTTCCTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGA
ATCTGCTAGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTAC
ACTGGCTTGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGC
TTGCACGGCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGA
TTGGCGTTAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAAC
GAGGAGGATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAA
GGATGCAGGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTG
GTGTTTATGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTG
GCCAACAGGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCT
CGTGGAGCAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTC
GCAAGAACTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGC
AAGCGTACCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAA
GGAGGCCAATGTCTCAGCCAAATACGTGTGGAGTCGCAAGGGACTCAGTC
TGGTGGATCTCGAGAATACGGACTACCTATTGGGTCTCTTTGCCATGATC
ATCTGCCGTACACGGTGATCGGGACAGGAACGTAGTCAGTGGCGGATCCT
TCGCTGAGTGAGCTCACGGAGCTGCCATCACGGTGTGAGCCGCAATGACA
AAGGATTTTTCTTTTCGTCGAGGGTGCTCGTATCGACATACCCACCACGA
TACCTTCCCCAGAGATCCTTTAGGAATCCGCCGAGTTGCGAGGCCTGTCC
AGAAGGGCTCCGAACTTACCTCGAGGAGTACCACTGATCTGGTGTAGCCT
GCGTTAACTTGGCTCTATGGTTATGGTCCACCTACCATGTAAATCTCCCC
TA
FMO02406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1809-RA | 1686 | CG1809-RA | 62..1246 | 24..1194 | 5365 | 97.7 | Plus |
| CG8147-RA | 1862 | CG8147-RA | 486..575 | 362..451 | 225 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9562247..9563338 | 92..1172 | 4715 | 97.8 | Plus |
| 2R | 25286936 | 2R | 9561699..9561768 | 24..93 | 350 | 100 | Plus |
| 3R | 32079331 | 3R | 9495347..9495436 | 362..451 | 225 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:57 has no hits.
FMO02406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:31 Download gff for
FMO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1809-RA | 51..1235 | 24..1194 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:33 Download gff for
FMO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1809-RA | 62..1246 | 24..1194 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:21 Download gff for
FMO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1809-RA | 62..1246 | 24..1194 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:21 Download gff for
FMO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9561699..9561768 | 24..93 | 100 | -> | Plus |
| 2R | 9562249..9563363 | 94..1194 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:33 Download gff for
FMO02406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5449204..5449273 | 24..93 | 100 | -> | Plus |
| arm_2R | 5449754..5450868 | 94..1194 | 97 | | Plus |
