FMO02407.5prime Sequence
1261 bp (1044 high quality bases) assembled on 2008-05-23
> FMO02407.5prime
ATAATACGAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACA
GAGAAGCAAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTA
TATCGTTGAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTT
TACTTCCATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCAT
CGACTTGTGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGG
TTTAGTTTTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTC
GCACCGATGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCG
GTGTCGATTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCAT
CAACTCGATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCT
CACAGGTCACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTT
CTGGCATCCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAA
GATCACAGAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGA
TATCCTTGCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCG
ACAAGGGAGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGC
CTCGAAGGCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTA
CCCTACAACTAACGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGT
CGGGTTAATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTAT
GGATGGAAAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGG
ATAGCGATGACGATTACGATTATTTACATTTATTTTCACAAAGTTTACAT
CTCGGGTACACCACCTGATTTCTTTAATGATGCCCAACAGATAGCACACT
GAAAACCCGAAGTTGGAAAACCACTGAAAGTGTGGAAGAAAACAAACGCG
CGTCGTGCCTATGGCCACCAATTTTCGACCCTCTCGATCTGCCCAGGATG
GGTGAACAACCACTGCGGTTCGAAGAGTCCCCCGCCAGTGTTAGCCCGTC
GCCTAGATCCATCGACGAGTAGATGCAATCGGAACCATCATTGGAACAGG
CCCGACAGGTCGGTTTCCTAATAAGCCTTCCCATTCCAATCTCCGGGCGT
TGTATATATGT
FMO02407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42505-RA | 3446 | CG42505-RA | 57..1227 | 24..1181 | 5205 | 97.2 | Plus |
| CG42504-RA | 3446 | CG42504-RA | 57..1227 | 24..1181 | 5205 | 97.2 | Plus |
| CG31358-RB | 1979 | CG31358-RB | 57..1227 | 24..1181 | 5205 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12031008..12031370 | 593..231 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 12030362..12030724 | 1112..759 | 1270 | 95.1 | Minus |
| 3R | 32079331 | 3R | 12030784..12030953 | 762..593 | 835 | 99.4 | Minus |
| 3R | 32079331 | 3R | 12031424..12031570 | 233..87 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 12031634..12031701 | 91..24 | 325 | 98.5 | Minus |
| 3R | 32079331 | 3R | 12041098..12041363 | 324..589 | 265 | 73.3 | Plus |
| 3R | 32079331 | 3R | 12041461..12041609 | 609..757 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:30 has no hits.
FMO02407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:33 Download gff for
FMO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31358-RA | 28..1201 | 18..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:23 Download gff for
FMO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31358-RB | 54..1227 | 18..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:24 Download gff for
FMO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31358-RB | 54..1227 | 18..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:24 Download gff for
FMO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12031009..12031368 | 233..592 | 100 | <- | Minus |
| 3R | 12031425..12031569 | 88..232 | 100 | <- | Minus |
| 3R | 12031638..12031704 | 18..87 | 95 | | Minus |
| 3R | 12030289..12030724 | 759..1181 | 92 | <- | Minus |
| 3R | 12030788..12030953 | 593..758 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:23 Download gff for
FMO02407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7856731..7857090 | 233..592 | 100 | <- | Minus |
| arm_3R | 7857147..7857291 | 88..232 | 100 | <- | Minus |
| arm_3R | 7857360..7857426 | 18..87 | 95 | | Minus |
| arm_3R | 7856011..7856446 | 759..1181 | 92 | <- | Minus |
| arm_3R | 7856510..7856675 | 593..758 | 100 | <- | Minus |
