FMO02408.5prime Sequence
1224 bp (1078 high quality bases) assembled on 2008-05-23
> FMO02408.5prime
ATAATACGAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGA
GCCTCGCCGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCAT
GTCCGGGATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCA
TGCAGTTCATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGC
AGTCCCGGCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTC
GAATAACATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAG
AGGAGATCTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACG
GTGATTGAGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCA
ATCGCAGAAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACG
AGGATGACTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCC
GCCGGCATGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAG
CAACGGGACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCG
GCAATATCGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTAC
AAGTGCCGCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCC
CATCTACTACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGC
TGGGAGGTCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGC
TGCGATCCCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACT
GCGCTCTAATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACA
AGGAGAGCACAGAGAGTCCTCGACTCGACTTGGCCCGTCATCATTTATGA
CACAACATTTTGGGATTCAAGGGGCCACGCACATGACTGTTATACTGCCC
GGCATGACTGAGACGATCAGCGTGTCAGATCAGTTCGGCGGAATCCCAAC
AGCAGGCCATCCTGGACTATGGAAAATGAGAACATGGACACATCCTGGAC
CTGCACAATAGACGCAGGTGTGACGATGAATCAATCGTATTGTGCTTCAC
TTTCATGGGCCGCTCACCAAGGCCTCGGTAGAAACCTTTCAATGTGTCTC
ACAGAACTCCGATATTTCGGGATA
FMO02408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 700..1865 | 24..1179 | 5255 | 97.5 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..1892 | 288..1179 | 3935 | 96.8 | Plus |
| ktub-RC | 2523 | CG9398-RC | 700..964 | 24..288 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 288..758 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 21121639..21121903 | 24..288 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122717 | 755..949 | 925 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21122779..21122909 | 953..1079 | 380 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:03 has no hits.
FMO02408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:34 Download gff for
FMO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9398-RB | 692..1769 | 16..1090 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:05 Download gff for
FMO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1771 | 16..1090 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:20 Download gff for
FMO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1771 | 16..1090 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:20 Download gff for
FMO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21121633..21121903 | 16..288 | 98 | -> | Plus |
| 2R | 21122001..21122468 | 289..756 | 100 | -> | Plus |
| 2R | 21122526..21122716 | 757..948 | 99 | -> | Plus |
| 2R | 21122774..21122911 | 949..1080 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:05 Download gff for
FMO02408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17009138..17009408 | 16..288 | 98 | -> | Plus |
| arm_2R | 17009506..17009973 | 289..756 | 100 | -> | Plus |
| arm_2R | 17010031..17010221 | 757..948 | 99 | -> | Plus |
| arm_2R | 17010279..17010416 | 949..1080 | 92 | -> | Plus |
