FMO02409.5prime Sequence
692 bp (692 high quality bases) assembled on 2008-05-23
> FMO02409.5prime
CAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGCTGTACTTG
CTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTGGTGGGCTC
CATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGGAGGCGTTA
ACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTGTCACCTTC
GTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAACGCCTGCTG
CACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCTGCAACTGG
CCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGTCCAGCATG
GGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCCCAGGGATA
CCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAACACGGGAT
ACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACAAGGATCGC
ACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGCTGCCGGCA
GGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCGATGGAGCA
GTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGTCGTGCTGC
CTCGCCAGCGCGATGAGGAAGCGCGCAAGCTTTCTAGACCAT
FMO02409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30160-RA | 844 | CG30160-RA | 61..727 | 8..674 | 3320 | 99.9 | Plus |
| Tsp42Eb-RB | 865 | CG18816-RB | 82..748 | 8..674 | 3320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6998929..6999181 | 8..260 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 7005217..7005469 | 8..260 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 6999483..6999731 | 426..674 | 1230 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7005771..7006019 | 426..674 | 1230 | 99.6 | Plus |
| 2R | 25286936 | 2R | 6999246..6999410 | 261..425 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 7005534..7005698 | 261..425 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:20 has no hits.
FMO02409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:36 Download gff for
FMO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18816-RB | 71..749 | 1..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:51 Download gff for
FMO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30160-RA | 55..733 | 1..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:17 Download gff for
FMO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Eb-RB | 76..754 | 1..680 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:17 Download gff for
FMO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6998923..6999181 | 1..260 | 98 | -> | Plus |
| 2R | 6999246..6999410 | 261..425 | 100 | -> | Plus |
| 2R | 6999483..6999737 | 426..680 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:51 Download gff for
FMO02409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2886428..2886686 | 1..260 | 98 | -> | Plus |
| arm_2R | 2886751..2886915 | 261..425 | 100 | -> | Plus |
| arm_2R | 2886988..2887242 | 426..680 | 98 | | Plus |
