FMO02410.5prime Sequence
1233 bp (921 high quality bases) assembled on 2008-05-23
> FMO02410.5prime
TATTATACGAAGTTATCAGTCCACATGAAGAAAAAGGTGTTACTGATGGG
GAAGAGCGGATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACT
ATATCGCCCGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCAC
TCCCATGTGCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGG
CGGTCAGGAGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACA
TCTTTCGTAATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAG
GAGATAGAGCGCGACATCCATTACTACCAAAGCTGCCTGGAGGCACTGCT
GCAGAATTCGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACC
TGGTGCCGGAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGAT
CTCATAAAATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCAT
TTGGGATGAAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGA
TACCAAATGTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTA
ATTGAGGCGGACGAGGTGCTGTTGTTCGAAAAGTCTACCTTTTTGGTGAT
CTCCCATTGCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGG
TGTCCAACATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCT
AAGTTCCATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGAC
ACCTTCACCACAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTG
CCCTCGGAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTGA
GGAGCTGGAAAATCCAAGCAACAATGCCATTAAACCATCATGGCCAAGGT
ACCATGCAGCTTTCTAGACCATTACGTTTGGCGCCGTGGGCCCAGGTAGT
GGTCATATCATATCATAAATCATATCATATCCACTAGCCTAGTGAGATCC
TGATCATGACTAGGGCTTGGAATCTCACAATAAAAACGCCGGGGCACGAA
CGTTCTGAACAATTCCGAATGGAATTCTGAGGCAGTACGGATCCTATCAC
CGGCTCAAGCTAACCGATCCAATACGCCCTGCCCTGTCCGTCAAGAGATA
CTGTGTGTAATCTCTACACGCATCGTGTCGCGA
FMO02410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RagA-B-RA | 1408 | CG11968-RA | 92..1024 | 25..955 | 4525 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8983125..8983551 | 947..522 | 1960 | 98.8 | Minus |
| 3R | 32079331 | 3R | 8983613..8983997 | 521..137 | 1910 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8984055..8984156 | 136..35 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 919..967 | 765..813 | 110 | 69.4 | Plus |
FMO02410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:22 Download gff for
FMO02410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11968-RA | 80..1016 | 22..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:48 Download gff for
FMO02410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagA-B-RA | 80..1016 | 22..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:41 Download gff for
FMO02410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagA-B-RA | 88..1024 | 22..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:41 Download gff for
FMO02410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8983613..8983997 | 137..521 | 99 | <- | Minus |
| 3R | 8983116..8983551 | 522..955 | 98 | <- | Minus |
| 3R | 8984055..8984154 | 37..136 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:48 Download gff for
FMO02410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4808838..4809273 | 522..955 | 98 | <- | Minus |
| arm_3R | 4809335..4809719 | 137..521 | 99 | <- | Minus |
| arm_3R | 4809777..4809876 | 37..136 | 100 | <- | Minus |
