FMO02413.5prime Sequence
1224 bp (916 high quality bases) assembled on 2008-05-23
> FMO02413.5prime
CTATTAAAATACGAAGTTATCAGTCGACATGGCGATGAACAGTGGGACGC
AAACGAATGCGCTGACATCATCCTTTACCATGAAGAAAAAGGATGCGGCC
GCGGAAAAGGAGAACCTATGGTCGGCGATATTGAATGAAGTACAAACACA
GGGCAGCACAAAACTTCCATCAAACAAATCTGTACTAGTATTAGGCGACA
ATGCCACCGGAAAGACGACACTCATTGCCAAACTGCAGGGCGTCGAGGAT
CCGAAGAAGGGTTCCGGCCTGGAGTATGCCTACATTGATGTCAAGGATGA
GTACAGAGACGACATGACGCGTTTAGGCGTTTGGGTCCTGGACGGTGATC
CAGGACACACAAACCTGCTACACTATGCGCTCAACGAAACGAACTATGCA
CACACACTCGTCATCCTCACCGTTTCGATGACGCAGCCGTGGGGCTGGCT
GGAGCAGCTAAACCATTGGATCAAGGTCCTCGGCCAGCACATCGATAGCC
TGCAGCTGGACGCCAAAGAGAAGGAGGCGGCCCGCCAGCGACTGACCACC
ACGTGGCAGAGCTACTGTGAGGTGGGCGACGATCTGGATCCAGGCTCCCC
CGTCAAGCGGACGATGCGCAACAACTCGATCGACGAGGATGACCTGCTGC
CCGCTGACGGAGGATGCACTAATTACAAATCTGGGCCTCGACATCGTTGT
TGTGGGTCACAAAAGACGGACTACATGACCACGCTAGAGAAGGAGTACGA
GTATCGTGACGAGCACTTTGACTTCATCCAGCAGTGGATACGTAACTTCT
GCCTGCGGCATGGCACTTCGCTCTTCTACACGAGCGTCAAGGAAGACAAG
ACTGTGATGTCCTCTACAAGTATCTGACGCATCGAATTTATGGTCTACCA
TTCCGGACGCAGCGCTAGACGTTGAGAAGGATGCGGAACTCATTCCGGCG
GCTGGGATAGCCTGAAGAAAATTATAATTTATACAAAATATGCATGGAGG
CAGCCGAAGATCCCTAACAAAAATTATCAAATCGCCACCACTAGAGGCGC
GATTCATCCCGAGGCGGAAGTGCGACGGAGGATGAGCAGGCATCCTGGAC
CGCCCATCGGAAATCTTAACAAGGCGACAGGTGCCGGTATCACCCACTGG
CAATCCAGGCTAAGCATATAAACGGACCGAAGCGCTGGGAACCTCGAAAC
GATATTCTCCAGAAGAAATGTAAA
FMO02413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 347..1429 | 27..1098 | 4795 | 97.1 | Plus |
| Dlic-RD | 3715 | CG1938-RD | 347..1429 | 27..1098 | 4795 | 97.1 | Plus |
| Dlic-RB | 3371 | CG1938-RB | 97..1085 | 121..1098 | 4325 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11161317..11161710 | 311..705 | 1925 | 99.7 | Plus |
| X | 23542271 | X | 11161781..11162012 | 714..943 | 1015 | 97.8 | Plus |
| X | 23542271 | X | 11161060..11161251 | 120..311 | 960 | 100 | Plus |
| X | 23542271 | X | 11155135..11155230 | 27..122 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:17 has no hits.
FMO02413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:41 Download gff for
FMO02413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1938-RC | 387..1480 | 21..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:36 Download gff for
FMO02413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1435 | 21..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:35 Download gff for
FMO02413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1435 | 21..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:35 Download gff for
FMO02413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11155130..11155228 | 21..120 | 97 | -> | Plus |
| X | 11161061..11161251 | 121..311 | 100 | -> | Plus |
| X | 11161318..11161718 | 312..715 | 99 | -> | Plus |
| X | 11161783..11162012 | 716..943 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:36 Download gff for
FMO02413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11055351..11055751 | 312..715 | 99 | -> | Plus |
| arm_X | 11049163..11049261 | 21..120 | 97 | -> | Plus |
| arm_X | 11055094..11055284 | 121..311 | 100 | -> | Plus |
| arm_X | 11055816..11056045 | 716..943 | 97 | -> | Plus |
