FMO02414.5prime Sequence
1203 bp (999 high quality bases) assembled on 2008-05-23
> FMO02414.5prime
CAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATCGCGCCACC
CAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCCATTGGCTA
CAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGAGCTGGAAA
TGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACAAGGTCAAG
GATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGGAAGACCAC
CATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTGCGATCCTA
TCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGGATGGCAAG
GACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCAATTCCGCA
GAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAGCGAGTATC
CCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCAACAACAGC
CAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAACCTCACAAA
GCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGAGCTGGGTC
GTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGGGTACTCAG
AATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCGCTCGGCGA
GCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCCGCTGGTTA
AATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGCTGAGTCGG
CTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTTTATGTGTG
CAGCAACGAACTAGAGTCCCTGCCCTCTGCTGTCAAGGATCTACGGATCG
ACCTGTTGGATGTGTGGGGCAATTTGCTTCAGGAATTCAATGCAAATGCC
GCGCAGCAAATGTATCTGCAAAAGGCGCATCTAATTCGCCGCAACCTTTG
TGGCTTTTGGGAGCTCGAGCTGGTGATAAAGTATATGCTGCCCTTGTCCG
CGGGCTCTTATCCCGCTGGCTAATAATCTGATAGGAGCTACCAATGCCGT
GCGCGAGCTGCTTGCCAGCGCAAGGAGACTTCTTCAGCGCGGGTTAGCGT
AATTCTATCACGATAGAAACCTCCAATACAGCTGGGAGCCACTCAAAATA
CTA
FMO02414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lrr47-RB | 1874 | CG6098-RB | 87..1238 | 4..1141 | 5205 | 97.7 | Plus |
| Lrr47-RA | 1589 | CG6098-RA | 87..1238 | 4..1141 | 5205 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10517421..10517998 | 4..581 | 2875 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10518058..10518546 | 580..1068 | 2185 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:56 has no hits.
FMO02414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:42 Download gff for
FMO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6098-RA | 83..1139 | 1..1058 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:52 Download gff for
FMO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrr47-RA | 85..1141 | 1..1058 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:43 Download gff for
FMO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrr47-RA | 85..1141 | 1..1058 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:43 Download gff for
FMO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10517419..10517998 | 1..581 | 99 | -> | Plus |
| 2L | 10518060..10518536 | 582..1058 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:52 Download gff for
FMO02414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10517419..10517998 | 1..581 | 99 | -> | Plus |
| arm_2L | 10518060..10518536 | 582..1058 | 98 | == | Plus |
