FMO02416.5prime Sequence
1029 bp (1029 high quality bases) assembled on 2008-05-23
> FMO02416.5prime
CAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTACTTCGACC
ACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGTAATTCGAG
AGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTATGGCGCTGC
TCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCCGGCGCAGC
AGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCCAACTTGAT
ACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACACAACAGATC
GGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACTGCCGCGTT
CGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGGGATCTCCA
CATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCGCTTTCTGG
CGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCGTTTCGGTG
CAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACGGAGCCCAA
GATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGCTCAGATCC
TGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCAATCTGACG
TGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTGTGGCACAA
GGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCGCGTAGAGT
CCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAGTCCAGCAC
ACGGACTCGGGCAACTACACCTGCTCCGCGGACAACTCGAATTCTGACAG
CGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCATGCAGCACG
AGCTGGGCTCGAGGCTGCTCCTGCCCCCTCTGCCCTGTGCTCCTGGCGGT
CCTGCTGGTCGTCCTGCTGGGCCCCACCTCCAGCCTCAGATTCGCCCCCC
GCTCTCACCGCGCAAGCTTTCTAGACCAT
FMO02416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr5-RA | 1817 | CG5308-RA | 369..1371 | 8..1007 | 4925 | 99.6 | Plus |
| dpr5-RB | 1419 | CG5308-RB | 46..973 | 83..1007 | 4550 | 99.6 | Plus |
| dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 339..653 | 330 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11503411..11503780 | 213..582 | 1850 | 100 | Plus |
| 3R | 32079331 | 3R | 11504295..11504552 | 583..840 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 11505274..11505443 | 841..1007 | 690 | 96.5 | Plus |
| 3R | 32079331 | 3R | 11501115..11501246 | 83..214 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 11500352..11500428 | 8..84 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 11535995..11536180 | 556..371 | 255 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:36 has no hits.
FMO02416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:44 Download gff for
FMO02416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5308-RA | 362..1382 | 1..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:19 Download gff for
FMO02416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..1382 | 1..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:18 Download gff for
FMO02416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..1382 | 1..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:18 Download gff for
FMO02416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11504295..11504552 | 583..840 | 100 | -> | Plus |
| 3R | 11505274..11505454 | 841..1017 | 96 | | Plus |
| 3R | 11503412..11503780 | 214..582 | 100 | -> | Plus |
| 3R | 11500345..11500428 | 1..84 | 95 | -> | Plus |
| 3R | 11501117..11501245 | 85..213 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:19 Download gff for
FMO02416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7326839..7326967 | 85..213 | 100 | -> | Plus |
| arm_3R | 7326067..7326150 | 1..84 | 95 | -> | Plus |
| arm_3R | 7329134..7329502 | 214..582 | 100 | -> | Plus |
| arm_3R | 7330017..7330274 | 583..840 | 100 | -> | Plus |
| arm_3R | 7330996..7331176 | 841..1017 | 96 | | Plus |
