FMO02420.5prime Sequence
1219 bp (1029 high quality bases) assembled on 2008-05-23
> FMO02420.5prime
TCAGTTCGTATAGCATAATTATACGAAGTTATCAGTCGACATGCTGCTCT
CAATGCAAATGTGGCGCTCTCTGTGGCTGGCGGCCCTATTCTGCGGATTA
GCCCAGGCCAAAGGTTCCCACAAGGTGCACTGTTCGGAGGATCAGATGAG
GGTTGACATCGGACTGCCGGATGCGGAGTCAAAGGATCAGAGTGCTCCTC
AGATCTATTTGGAGGGATTGAAGGGATATCCGGATGAACGATGCCAGCCG
CAAATCGATGGATCCCTGGCCGTTTTTCGGCTTTCACTCAGCGATTTTTA
CGAGTGCGGAGTAACTCGAATGGTCAACCAGCTAACGGGCAAGAAGGTGT
ATTACCATAAAATCATCATCGAGTCAACCAGCGGCAAGGAGATCGTCAGC
GTTAAGTGCATCACCACCGCCAGTCCCGCCTATAATGTGATGATGAATGC
CACCACCGGGTCCAGTTCCACGTCCACTTCCAGCGGCGGCATCCACGGCC
TGGTCAAGCGGGATGTGCTGCCGGCGGGATTCCAGGAACCCGAGGATCTG
GAGATCACCACATCGCTGACCAAGCGGGCCCCGGAGCCACGACTCTCAAT
TGGCGTTAGCCAGGATGGTCAGAAGTTCACCAGGGATTTGACTGTCAAGT
CGGGCACACCTTTGACAATGGAAATCAATCTGGATGAGGACTCTGCACCT
GTTTATGGTCTGGGTGTCAACTATTTGGATGTGACGGATACGCATACGTC
ATCGGAAACGTTGATCTTCAAGGGCTGCACAGTGGATCCCTATCTCTTCG
AGAACTTCAACACCATTGATGGCGACATTTTGAGTGCCAAGTTCAAGGCC
TTCAAGTTCCCCGACTCGTCGTACGTGCAATTCCGTGCCACGGTCAACGT
GTGTTTGGACAAGTGCCTCGGCACCCAGTGCTCCAACACCAGGTGGGCTT
CGGTCGACGCAAGCGAGAGATCAGCTCAGCGAACAAGTCTACGAGATCTC
GCTGCATGTCCTGCAGTTCAGATATCGAGGTGTCACAGATGAGTCCTGCA
GCTGAGGAGAAGCTTAGAGCTGAGCTGCACAGCGCTTGTAGGAATAGTCC
GCAACTTGCATGGAACCAAAGCCCGCAATGCTCAACCGCCTTGTCTGGAC
ACGGGACTGGAACTCCATGCCGGAATCGGAGCGCATCGAACGCCGGCGCT
GCATCTCTGAAGAATCCTT
FMO02420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1956 | CG13432-RB | 261..1449 | 41..1192 | 4905 | 96.1 | Plus |
| qsm-RA | 1817 | CG13432-RA | 122..1310 | 41..1192 | 4905 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20565277..20565503 | 338..112 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 20563837..20564069 | 1004..774 | 1065 | 99.1 | Minus |
| 2R | 25286936 | 2R | 20565000..20565207 | 544..337 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 20564130..20564252 | 774..652 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 20564322..20564431 | 653..544 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 20581559..20581633 | 115..41 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:28 has no hits.
FMO02420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:17 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:59 Download gff for
FMO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1172 | 41..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:34 Download gff for
FMO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1172 | 41..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:34 Download gff for
FMO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20563794..20564068 | 775..1038 | 96 | <- | Minus |
| 2R | 20564130..20564251 | 653..774 | 100 | <- | Minus |
| 2R | 20564323..20564431 | 544..652 | 100 | <- | Minus |
| 2R | 20565001..20565206 | 338..543 | 100 | <- | Minus |
| 2R | 20565278..20565501 | 114..337 | 100 | <- | Minus |
| 2R | 20581561..20581637 | 35..113 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:59 Download gff for
FMO02420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16451828..16451936 | 544..652 | 100 | <- | Minus |
| arm_2R | 16451299..16451573 | 775..1038 | 96 | <- | Minus |
| arm_2R | 16451635..16451756 | 653..774 | 100 | <- | Minus |
| arm_2R | 16452506..16452711 | 338..543 | 100 | <- | Minus |
| arm_2R | 16452783..16453006 | 114..337 | 100 | <- | Minus |
| arm_2R | 16469066..16469142 | 35..113 | 94 | <- | Minus |
