FMO02421.5prime Sequence
1213 bp (1035 high quality bases) assembled on 2008-05-23
> FMO02421.5prime
TTTATACGAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACAC
ATAAATGAATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTG
TGAAGGTACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTT
ACAAGAGGGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAAC
ATGAGCAACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTT
GCCGTGGAAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGG
ACTACATAGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAA
CAACTCGTGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGA
TCCTGTTCCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAAC
ACGATAGAAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGA
ATGAGGGATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAA
CGTGCCGCCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAA
ATGAAAGGATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATC
GAGCGTATCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAA
AGAGCAGCTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAAT
CTAATAAGCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAG
ACAAATGAAGTGCCCATAGTTACCAAAAAGAGGTACATACCAACCACCAA
GGAATGGGACGAGCGATGTCGTGCCAAACATTTGGCTAAGATGGAAGCTG
AAAAGAAAAATCAGATGGGTGTTCAGGATGCGAACCCTTCGCATCTGCTG
TGCCACCAAAACATTGGTGACTCAATGTGATGACATATCTCGTCGGAGTA
TTCGTCTGTGCGATCGCTTTAGTCACTGCTAACATGGCGATACGAGAAGC
GCAGGGAAATCTCACAACTTCGGACCCTCAACTGACATTCGTCGATCGCG
TACATTGACACTGTCATAAATGAGGATCGGCACCCTTAGACTGACATGCT
GTTTGGAATCTCACTGAAAACTGAAGGTCCTAATGGGCATATAAGCCCCG
GTGTTATAGGCCT
FMO02421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-RB | 1657 | CG6304-RB | 258..1326 | 23..1077 | 4935 | 98.3 | Plus |
| CG6304-RA | 1526 | CG6304-RA | 199..1267 | 23..1077 | 4935 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17011866..17012612 | 1024..286 | 3345 | 98.4 | Minus |
| 2L | 23513712 | 2L | 17012674..17012936 | 285..23 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:02 has no hits.
FMO02421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:48 Download gff for
FMO02421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 115..1187 | 17..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:32 Download gff for
FMO02421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 115..1187 | 17..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:51 Download gff for
FMO02421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 195..1267 | 17..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:51 Download gff for
FMO02421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17011807..17012612 | 286..1077 | 97 | <- | Minus |
| 2L | 17012674..17012940 | 17..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:32 Download gff for
FMO02421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17011807..17012612 | 286..1077 | 97 | <- | Minus |
| arm_2L | 17012674..17012940 | 17..285 | 98 | | Minus |
