FMO02422.5prime Sequence
1217 bp (1042 high quality bases) assembled on 2008-05-23
> FMO02422.5prime
CAGTCGACATGGCAATCATACTGCAAGAAGCCCAGAAGTGGTATCGGGAC
CTAATGGACAATAAAAGCGATCCTCGCGTTAACGACTTCTTTCTGCTATC
CTCGCCACTGCCCACACTTTGTATGTGCATATTCTATGCCTACTTCAGCA
AATCCCTGGGGCCCAGGCTGATGGCCAAACGGAAACCGATGGAGTTGCGA
TCTGTTTTAGTTGTATACAACGCGATACAAACAATATTTAGCGCGTGGAT
CTTTTATGAGTACTTAATGAGCGGATGGTGGGGCCACTACAGCTTAAAGT
GTCAGCCCGTTGACTATAGCACCACTGGCTTGGCCATGCGGATGGTCAAC
ATTTGCTGGTGGTACTACATATCTAAGTTCACCGAGTTCTTCGACACACT
CTTCTTCATTCTGCGAAAAAAGAACGAGCACGTCTCCACACTACACGTCA
TCCATCACGGCTGCATGCCGTTCTCCGTCTGGATGGGTCTGAAGTTTGCG
CCAGGCGGTCATAGCACTTTCTTTGCCCTTCTCAACTCGTTTGTGCACAT
TGTAATGTATTTCTACTACATGATCGCCGCCATGGGTCCAAAGTACCAGA
AGTACATCTGGTGGAAGAAGTACCTGACCACCTTCCAAATGGTTCAATTC
GTGGCCATTTTCACCCACCAGTTCCAGCTTTTGTTCCGCGAATGTGATTA
CCCCAAGGGCTTCATGGTCTGGATCGGATTGCACGGCGTTATGTTCCTGT
TCCTGTTCTCCGACTTTTACAAAGCGAAATATCTCAACGCAGCTCGACGT
CGCCGGCAGGCGGTCAAGGCCAATGGCTATGCCAACGGCTCGGCTTCGAA
TGGGCACAGCAAGCATCTTGGAGAGGGTGACGCCCTGATTGCAAACGGTT
GCAATACTGGGGCTTGCATGCCGGTGATGGAGGACGAGTACGTCAAAGCA
AGGGGCATCGGATGGTGCCTACAGGAGGCTTCTTCAGGAGGCGTGTTATC
CAACAACGATGCCATCTCAACCCGGACAGCAGTAGTTCTAGTCTGCACCA
GCGCAAAGTCAAGCAAGCTTTCTAGACAATCGTTTGGCGCCGCGGGCCCA
GGTAAGGTGTCTATCTATCATATCCTAATCTAAATCCACACAGCTAGGAT
CTGCTATGACCTATGGCTGGAACCTCACACATAAAAGGCGCGGGGGCGCA
CGCGAGACCGCTCTGTG
FMO02422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31523-RF | 2585 | CG31523-RF | 251..1311 | 9..1062 | 5115 | 99.2 | Plus |
| CG31523-RE | 3232 | CG31523-RE | 898..1958 | 9..1062 | 5115 | 99.2 | Plus |
| CG31523-RG | 2576 | CG31523-RG | 242..1302 | 9..1062 | 5115 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4467294..4467573 | 920..641 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 4468214..4468405 | 260..69 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 4467843..4468007 | 505..341 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 4467630..4467771 | 643..502 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 4468066..4468148 | 341..259 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 7982860..7983134 | 628..354 | 415 | 76.7 | Minus |
| 3R | 32079331 | 3R | 4466695..4466844 | 1062..920 | 395 | 92 | Minus |
| 3R | 32079331 | 3R | 4444122..4444251 | 631..502 | 335 | 83.8 | Minus |
| 3R | 32079331 | 3R | 4468464..4468524 | 69..9 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 22555672..22555780 | 529..637 | 290 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:50 has no hits.
FMO02422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:37 Download gff for
FMO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31523-RD | 103..1179 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:25 Download gff for
FMO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31523-RD | 103..1179 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:46 Download gff for
FMO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31523-RG | 235..1311 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:46 Download gff for
FMO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4466686..4466843 | 921..1073 | 91 | <- | Minus |
| 3R | 4467294..4467572 | 642..920 | 100 | <- | Minus |
| 3R | 4467632..4467768 | 505..641 | 100 | <- | Minus |
| 3R | 4467844..4468006 | 342..504 | 100 | <- | Minus |
| 3R | 4468066..4468146 | 261..341 | 100 | <- | Minus |
| 3R | 4468214..4468404 | 70..260 | 100 | <- | Minus |
| 3R | 4468464..4468531 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:25 Download gff for
FMO02422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 292408..292565 | 921..1073 | 91 | <- | Minus |
| arm_3R | 293016..293294 | 642..920 | 100 | <- | Minus |
| arm_3R | 293354..293490 | 505..641 | 100 | <- | Minus |
| arm_3R | 293566..293728 | 342..504 | 100 | <- | Minus |
| arm_3R | 293788..293868 | 261..341 | 100 | <- | Minus |
| arm_3R | 293936..294126 | 70..260 | 100 | <- | Minus |
| arm_3R | 294186..294253 | 1..69 | 94 | | Minus |
