FMO02423.5prime Sequence
985 bp (786 high quality bases) assembled on 2008-05-23
> FMO02423.5prime
CCATATTTTATAGGAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATC
CTGCAGTTCGAGTACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGA
CACTCTCTACGGGAATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGG
TCTGCGTTCATGGCTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTG
TATCCCAACAAGTTCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAA
TACTCTCTTCAATCTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACT
TCCTAACCAACAGCAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCT
GGCGATTTACTTTTTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGC
CGTCGACTGGGTGCATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGA
ATATGGCTCACTATGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCG
CGAATCCGGGAGTCGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTA
TACGTACACCAACGAGATCATGACCTACCTGTTTGATTTCCCCCATGGCG
CCACTCCGGATGAGCCGCATCGCGACTGGAAGACCTACTTCGATGTGATC
GTGGTGGATGCCCGCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCG
GCAGGTGGACACAAAGACCGGAAGCCTGAAGATCGGCCACACGTTTGGAC
CCCTGCAGCCGGTCAGGTTTATTCCGGTTGCTCCTGCGAGCTCTTTACCA
AGATCATCATGCCAAAGGCAAGGACGTGCTCTATGTGGGGCGATCTCATT
TTTGGCGATATTCTCAATCAAAAAATATCGAGGCTGGCGCACCTTTCTTA
ATTGTGCCCGAATTGTGAAGGAAGCTGCACGTTTGGACCGGATTAATGCC
ACTGTTTGCTGGATCTACAGAACTGGAACATCAGC
FMO02423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32549-RH | 2677 | CG32549-RH | 911..1866 | 29..983 | 4260 | 97.2 | Plus |
| CG32549-RG | 2806 | CG32549-RG | 1040..1995 | 29..983 | 4260 | 97.2 | Plus |
| CG32549-RF | 2652 | CG32549-RF | 828..1783 | 29..983 | 4260 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18391476..18391968 | 938..448 | 1900 | 96 | Minus |
| X | 23542271 | X | 18392549..18392701 | 181..29 | 765 | 100 | Minus |
| X | 23542271 | X | 18392335..18392481 | 328..182 | 735 | 100 | Minus |
| X | 23542271 | X | 18392040..18392161 | 449..328 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:33 has no hits.
FMO02423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:39 Download gff for
FMO02423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RA | 1026..1966 | 24..963 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:17 Download gff for
FMO02423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RF | 823..1763 | 24..963 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:16 Download gff for
FMO02423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RF | 823..1763 | 24..963 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:16 Download gff for
FMO02423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18392549..18392712 | 24..181 | 95 | <- | Minus |
| X | 18391452..18391966 | 450..963 | 95 | <- | Minus |
| X | 18392040..18392160 | 329..449 | 100 | <- | Minus |
| X | 18392335..18392481 | 182..328 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:17 Download gff for
FMO02423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18285485..18285999 | 450..963 | 95 | <- | Minus |
| arm_X | 18286073..18286193 | 329..449 | 100 | <- | Minus |
| arm_X | 18286368..18286514 | 182..328 | 100 | <- | Minus |
| arm_X | 18286582..18286745 | 24..181 | 95 | <- | Minus |
