FMO02426.5prime Sequence
930 bp (930 high quality bases) assembled on 2008-05-23
> FMO02426.5prime
CAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTTCCCGTCTG
TTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTGTCGGAGGG
TGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCTGGCACAGC
CCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCGATATCCAT
GGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGCTATCCGCC
GGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGGCAAGCAGT
CGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGTATTCGGAG
AACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATTAATAGAAT
CTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAAGTTGTGGA
AGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCATTGTGGAT
GAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTTACCTCGAT
GGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGATCAGGGAC
TACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCATTGGGTGG
GGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAAGTTGTGGT
CAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGCCCATCAAG
TCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGGTCACTTTG
TTTTCCGCCCCCAACTATTGCGGTGAATTCGACAATGCTGGTGCCATGAT
GTCCGTGGACAATACACTCATGTGCTCCTTCCAAATCCTGAAGCCTGTCG
AGAAGCGCAGAAGCAAGCTTTCTAGACCAT
FMO02426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1-13C-RA | 1892 | CG9156-RA | 655..1556 | 8..909 | 4510 | 100 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 254..1128 | 33..907 | 2230 | 83.7 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 429..1288 | 48..907 | 1915 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15359437..15360338 | 909..8 | 4510 | 100 | Minus |
| 3R | 32079331 | 3R | 12424790..12425664 | 907..33 | 2230 | 83.7 | Minus |
| 3R | 32079331 | 3R | 24518843..24519189 | 57..403 | 820 | 82.4 | Plus |
| X | 23542271 | X | 10406379..10406692 | 84..397 | 715 | 81.8 | Plus |
| 3R | 32079331 | 3R | 24519597..24519874 | 408..685 | 685 | 83.1 | Plus |
| X | 23542271 | X | 10406764..10407038 | 408..682 | 430 | 77.1 | Plus |
| 2R | 25286936 | 2R | 17955968..17956334 | 535..169 | 395 | 73.8 | Minus |
| 3R | 32079331 | 3R | 24519961..24520089 | 714..842 | 240 | 79.1 | Plus |
| X | 23542271 | X | 10407172..10407299 | 756..883 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:24:03 has no hits.
FMO02426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:53 Download gff for
FMO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9156-RA | 648..1561 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:13 Download gff for
FMO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-13C-RA | 648..1561 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:31 Download gff for
FMO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-13C-RA | 648..1561 | 1..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:31 Download gff for
FMO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15359433..15360342 | 1..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:13 Download gff for
FMO02426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15253466..15254375 | 1..912 | 99 | | Minus |
