FMO02429.5prime Sequence
1236 bp (1055 high quality bases) assembled on 2008-05-23
> FMO02429.5prime
CAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCCCCACCTCT
ACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAGGCCACCCA
ACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGACAGTGTGA
TCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATAGGCCGACC
AGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGCCAACCGAG
CTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGTTCGCCGAC
GAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGCACCTGCAA
AGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATGGTGGATTG
GCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTATCCTGTCTT
GGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACACACGGAGAC
TTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGTTGGGCGCC
TTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTTCTCCATTG
AAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGCCCGAGTGT
CCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGCGTGATGTC
TTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAGGGCCAAAC
AGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTTGCCAACGT
GATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGCGAAAATCACA
CATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACAAAGAGCACCA
GAGGGTGAGGTGATGACACAGTACTTCACAGACTGGAGATCGGTACTGAT
GACTCCGGCTCTGATTTGTTCTCATCTGCCCATGGTCATCGAGCACAGAT
CGACGAGACTCACCGCTCTTTATCTAATGCCACTGATATGCTGCAGATAA
GTCGAATCGTGTTGATCCTAGAAGGCCACGTTGGAGTCACTGACAGAACA
CTCAGCCGGATTCAGCTAAATAACCTGGAATCTTGGGGACATCCGCTTCG
ATCATGTGTGGACCACAAGAATCTGCGAGGGCTTTAGAATCGCACATACG
CCTGCTCTTAACGAAACAACATCTAAGGTGTGAGCA
FMO02429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RD | 2248 | CG4370-RD | 296..1521 | 9..1217 | 5140 | 95.9 | Plus |
| Irk2-RA | 1894 | CG4370-RA | 296..1521 | 9..1217 | 5140 | 95.9 | Plus |
| Irk2-RC | 1485 | CG4370-RC | 249..1227 | 256..1217 | 3905 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514636..23515161 | 1046..530 | 2205 | 97.7 | Minus |
| 3R | 32079331 | 3R | 23515213..23515490 | 531..254 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 23518458..23518705 | 256..9 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:34 has no hits.
FMO02429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:56 Download gff for
FMO02429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4370-RA | 296..1391 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:02 Download gff for
FMO02429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1391 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:39 Download gff for
FMO02429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1391 | 9..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:39 Download gff for
FMO02429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23514600..23515159 | 532..1082 | 96 | <- | Minus |
| 3R | 23515213..23515487 | 257..531 | 100 | <- | Minus |
| 3R | 23518458..23518710 | 1..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:02 Download gff for
FMO02429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19340322..19340881 | 532..1082 | 96 | <- | Minus |
| arm_3R | 19340935..19341209 | 257..531 | 100 | <- | Minus |
| arm_3R | 19344180..19344432 | 1..256 | 98 | | Minus |
